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Updated: May 25, 2026

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
RASSF1A and CDH1 hypermethylation as potential epimarkers in breast cancer
Katarina Sebova1, Iveta Zmetakova, Vladimir Bella
1Laboratory of Cancer Genetics, Cancer Research Institute of the Slovak Academy of Sciences, Bratislava, Slovakia.
Abstract:
Breast cancer is the most common cancer in women worldwide, representing 28.2% of all female malignancies. In addition to genetic changes, epigenetic events, as aberrant DNA methylation and histone modification, are responsible for cancer development. Many tumour suppressor genes are inactivated by DNA hypermethylation, which could be utilized for identification of new epigenetic biomarkers. To investigate the relation between DNA methylation level and breast cancer progression, we analysed DNA methylation in RASSF1A and CDH1 promoters using quantitative multiplex methylation-specific PCR in paraffin-embedded tumour tissues and blood samples from 92 breast cancer patients and 50 controls, respectively. The associations between RASSF1A and CDH1 methylation levels and clinico-pathological parameters were tested by Kruskal-Wallis and van der Waerden ANOVA tests. Out of 92 breast cancer patients, 76 (82.6%) manifested various levels of RASSF1A (range from 1.20 to 92.63%) and 20 (21.7%) of CDH1 (range from 1.20 to 79.62%) methylation. However, no methylation was found in 50 controls. Increasing trends in RASSF1A methylation were observed in tumour size, lymph node status and TNM stage, but only CDH1 methylation levels showed statistically significant differences between the patient subgroups in lymph node status and IHC subtype. Overall, stable relatively high RASSF1A methylation could be utilised as universal tumour marker and the less frequent but highly methylated CDH1 promoter can serve for identification of potentially metastasising tumours.
Insights
Aberrant DNA methylation in RASSF1A and CDH1 promoters is linked to breast cancer progression. RASSF1A methylation may serve as a universal tumor marker, while CDH1 methylation could identify tumors with metastatic potential.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Breast cancer is a leading global malignancy in women.
- Epigenetic alterations, including DNA methylation, play a crucial role in cancer development.
- Tumor suppressor genes inactivated by hypermethylation can serve as potential biomarkers.
Purpose of the Study:
- To investigate the relationship between DNA methylation levels in RASSF1A and CDH1 promoters and breast cancer progression.
- To identify potential epigenetic biomarkers for breast cancer diagnosis and prognosis.
Main Methods:
- Quantitative multiplex methylation-specific PCR was used to analyze DNA methylation in RASSF1A and CDH1 promoters.
- Samples included paraffin-embedded tumor tissues from 92 breast cancer patients and blood samples from 50 controls.
- Statistical analyses included Kruskal-Wallis and van der Waerden ANOVA tests.
Main Results:
- RASSF1A methylation was detected in 82.6% of breast cancer patients, while CDH1 methylation was found in 21.7%.
- No methylation was observed in control samples.
- RASSF1A methylation showed increasing trends with tumor size, lymph node status, and TNM stage.
- CDH1 methylation levels significantly differed between patient subgroups based on lymph node status and IHC subtype.
Conclusions:
- RASSF1A promoter methylation can potentially serve as a universal tumor marker for breast cancer.
- CDH1 promoter methylation may help identify tumors with a higher risk of metastasis.
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