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Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...

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A selective fluorescent turn-on NIR probe for cysteine.

Xin-Dong Jiang1, Jian Zhang, Xiangmin Shao

  • 1The Key Laboratory for Special Functional Materials, Ministry of Education, Henan University, Henan, 475004, China. xdjiang@henu.edu.cn

Organic & Biomolecular Chemistry
|February 4, 2012
PubMed
Summary

A new fluorescent probe detects cysteine with high selectivity and sensitivity. This near-infrared (NIR) probe utilizes a cleavable 2,4-dinitrobenzenesulfonyl group, enabling a "turn-on" signal for thiol detection.

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Area of Science:

  • Analytical Chemistry
  • Biochemistry
  • Organic Chemistry

Background:

  • Cysteine, a crucial amino acid, plays vital roles in biological systems.
  • Accurate detection of cysteine is essential for understanding various physiological and pathological processes.
  • Development of selective and sensitive probes is critical for biological thiol analysis.

Purpose of the Study:

  • To develop a novel fluorescent probe for the selective and sensitive detection of cysteine.
  • To investigate the mechanism of the probe's response to thiols, particularly cysteine.
  • To explore the application of the probe in biological sample analysis.

Main Methods:

  • Synthesis of a novel aza-BODIPY based fluorescent dye.
  • Modification of the dye with a 2,4-dinitrobenzenesulfonyl (DNBS) protecting group.
  • Spectroscopic characterization (fluorescence emission and quantum yield) of the probe and its response to thiols.

Main Results:

  • A selective and sensitive 'turn-on' fluorescent near-infrared (NIR) probe for cysteine was successfully developed.
  • Cleavage of the DNBS group by thiols, such as cysteine, resulted in a significant increase in fluorescence intensity.
  • The probe exhibited a shift in emission from 734 nm to 755 nm with an enhanced fluorescence quantum yield (Φ(f)) from 0.03 to 0.14.

Conclusions:

  • The developed probe offers a promising tool for the sensitive and selective detection of cysteine in biological systems.
  • The 'turn-on' fluorescence mechanism provides a clear signal for thiol detection.
  • The NIR emission properties are advantageous for biological imaging applications.