Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least squares (OLS)...
Clearance Models: Noncompartmental Models01:17

Clearance Models: Noncompartmental Models

Clearance is a pharmacokinetic parameter traditionally defined by compartment models, signifying the rate at which a drug is expelled from the body. However, a noncompartmental model offers an alternative method for assessing clearance, primarily employing empirical data obtained after administering a single drug dose.
The noncompartmental approach capitalizes on extensive sampling data, correlating the volume of distribution to systemic exposure and the administered dosage. This method enables...
Multicompartment Models: Overview01:14

Multicompartment Models: Overview

Multicompartment models are mathematical constructs that depict how drugs are distributed and eliminated within the body. They segment the body into several compartments, symbolizing various physiological or anatomical areas connected through drug transfer processes such as absorption, metabolism, distribution, and elimination.
These models offer a more comprehensive representation of drug behavior in the body than one-compartment models. They accommodate the complexity of drug distribution,...
Compartment Models: Single-Compartment Model01:14

Compartment Models: Single-Compartment Model

The single-compartment model serves as a simplified representation of the human body. This model assumes that the body functions as a single, well-mixed open compartment. When a drug is administered intravenously, it enters the body and quickly distributes uniformly. The drug then undergoes biotransformation and elimination, ultimately leaving the body. The volume of this compartment is referred to as the apparent volume of distribution into which the drug can uniformly distribute. In this...
Compartment Models: Two-Compartment Model01:20

Compartment Models: Two-Compartment Model

The two-compartment model divides the body into central and peripheral compartments to account for varying blood perfusion rates among organs and tissues, affecting drug distribution. The central compartment includes blood and highly perfused tissues with rapid drug distribution, while the peripheral compartment contains tissues with slower drug distribution. After a single IV bolus dose, the drug concentration is high in plasma and low in tissues. The drug distribution between compartments...
Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models00:57

Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models

Physiological pharmacokinetic models, often called flow-limited or perfusion models, typically assume a swift drug distribution between tissue and venous blood, creating a rapid drug equilibrium. This premise is based on the idea that drug diffusion is extremely fast, and the cell membrane presents no barrier to drug permeation. In this scenario, where no drug binding occurs, the drug concentration in the tissue equals that of the venous blood leaving the tissue. This greatly simplifies the...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Time-lapse in vivo dynamics of human corneal immune cells reveals a density-diffusivity relationship.

The ocular surface·2026
Same author

Likelihood-free parameter inference for spatiotemporal stochastic biological models using neural posterior estimation.

Journal of theoretical biology·2026
Same author

Continuum models describing probabilistic motion of tagged agents in exclusion processes.

Physical review. E·2026
Same author

Parameter-wise predictions and sensitivity analysis for random walk models in the life sciences.

Journal of theoretical biology·2025
Same author

Inference and prediction for stochastic models of biological populations undergoing migration and proliferation.

Journal of the Royal Society, Interface·2025
Same author

Association of Anaesthetists guidelines: safe vascular access 2025.

Anaesthesia·2025
Same journal

Tension on dsDNA bound to ssDNA-RecA filaments may play an important role in driving efficient and accurate homology recognition and strand exchange.

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
Same journal

Publisher's Note: Amplitude-phase coupling drives chimera states in globally coupled laser networks [Phys. Rev. E 91, 040901(R) (2015)].

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
Same journal

Erratum: Shapes of sedimenting soft elastic capsules in a viscous fluid [Phys. Rev. E 92, 033003 (2015)].

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
Same journal

Erratum: Attenuation of excitation decay rate due to collective effect [Phys. Rev. E 90, 022142 (2014)].

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
Same journal

Publisher's Note: Role of connectivity and fluctuations in the nucleation of calcium waves in cardiac cells [Phys. Rev. E 92, 052715 (2015)].

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
Same journal

Publisher's Note: Lattice Boltzmann approach for complex nonequilibrium flows [Phys. Rev. E 92, 043308 (2015)].

Physical review. E, Statistical, nonlinear, and soft matter physics·2016
See all related articles

Related Experiment Video

Updated: May 25, 2026

Simulation of Human-induced Vibrations Based on the Characterized In-field Pedestrian Behavior
10:52

Simulation of Human-induced Vibrations Based on the Characterized In-field Pedestrian Behavior

Published on: April 13, 2016

Velocity-jump models with crowding effects.

Katrina K Treloar1, Matthew J Simpson, Scott W McCue

  • 1School of Mathematical Sciences, Queensland University of Technology, Brisbane, Queensland 4001, Australia.

Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
|February 7, 2012
PubMed
Summary
This summary is machine-generated.

This study introduces interacting velocity-jump processes to model crowded biological systems, moving beyond dilute approximations. The new models accurately predict collective cell behavior in dense tissues using hyperbolic partial differential equations.

More Related Videos

Using a Virtual Reality Walking Simulator to Investigate Pedestrian Behavior
06:38

Using a Virtual Reality Walking Simulator to Investigate Pedestrian Behavior

Published on: June 9, 2020

Improving 2D and 3D Skin In Vitro Models Using Macromolecular Crowding
09:14

Improving 2D and 3D Skin In Vitro Models Using Macromolecular Crowding

Published on: August 22, 2016

Related Experiment Videos

Last Updated: May 25, 2026

Simulation of Human-induced Vibrations Based on the Characterized In-field Pedestrian Behavior
10:52

Simulation of Human-induced Vibrations Based on the Characterized In-field Pedestrian Behavior

Published on: April 13, 2016

Using a Virtual Reality Walking Simulator to Investigate Pedestrian Behavior
06:38

Using a Virtual Reality Walking Simulator to Investigate Pedestrian Behavior

Published on: June 9, 2020

Improving 2D and 3D Skin In Vitro Models Using Macromolecular Crowding
09:14

Improving 2D and 3D Skin In Vitro Models Using Macromolecular Crowding

Published on: August 22, 2016

Area of Science:

  • Mathematical Biology
  • Collective Motion Modeling
  • Agent-Based Modeling

Background:

  • Velocity-jump processes model collective motion, often simulating bacterial 'run and tumble' behavior.
  • Traditional models neglect agent-to-agent interactions, limiting their use to dilute biological systems.
  • Dense cell populations in tissues are crucial for processes like wound healing and cancer invasion.

Purpose of the Study:

  • To develop novel velocity-jump processes that incorporate crowding and agent-to-agent interactions.
  • To enable accurate modeling of collective cell behavior in high-density biological tissues.
  • To bridge the gap between discrete stochastic models and continuum descriptions for crowded systems.

Main Methods:

  • Introduction of three distinct classes of crowding interactions into a one-dimensional velocity-jump model.
  • Utilizing simulation data and averaging arguments to derive continuum descriptions.
  • Developing systems of hyperbolic partial differential equations to represent the interacting processes.

Main Results:

  • Successfully derived continuum descriptions for interacting velocity-jump processes.
  • Demonstrated that the derived hyperbolic partial differential equations accurately predict the mean behavior of stochastic simulations.
  • Validated the model's applicability to high-cell-density scenarios.

Conclusions:

  • The developed interacting velocity-jump processes provide a robust framework for modeling collective motion in crowded biological environments.
  • The resulting continuum models offer accurate predictions for dense cellular systems, overcoming limitations of traditional approaches.
  • This work advances the understanding of cell-cell interactions in tissue dynamics.