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Related Concept Videos

RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
RNA Structure01:19

RNA Structure

The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
RNA Structure01:23

RNA Structure

Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Structure01:23

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The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Interference01:23

RNA Interference

RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...

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RNA-Associated Chromatin DNA-DNA Interaction Method
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A dynamic perspective of RNAi library development.

Qiuwei Pan1, Luc J W van der Laan, Harry L A Janssen

  • 1Department of Gastroenterology and Hepatology, Erasmus MC-University Medical Center, Rotterdam, The Netherlands.

Trends in Biotechnology
|February 7, 2012
PubMed
Summary

RNA interference (RNAi) libraries, including synthetic and lentiviral types, are crucial for genome-wide genetic screens. This review compares their principles and applications to guide library selection for specific research needs.

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Area of Science:

  • Molecular Biology
  • Genetics
  • Biotechnology

Background:

  • The mechanism of RNA interference (RNAi) has spurred the development of powerful genetic screening tools.
  • RNAi libraries are now widely available for various organisms, including invertebrates, plants, and mammals.
  • Academic and industrial collaborations have accelerated the commercialization and evolution of these libraries.

Purpose of the Study:

  • To provide a comparative review of different RNAi library types.
  • To discuss the principles and applications of synthetic and lentiviral RNAi libraries.
  • To guide researchers in selecting appropriate RNAi libraries for their specific experimental needs.

Main Methods:

  • Comparative analysis of RNAi library technologies.
  • Review of scientific literature on RNAi library development and application.
  • Evaluation of the unique properties and limitations of synthetic versus lentiviral RNAi libraries.

Main Results:

  • Synthetic RNAi libraries were among the earliest tools developed.
  • Lentiviral RNAi libraries represent a more recent advancement with distinct advantages.
  • Both library types enable genome-wide, loss-of-function genetic screens.

Conclusions:

  • Understanding the unique properties and limitations of each RNAi library is essential.
  • Informed library selection is critical for successful genome-wide genetic screens.
  • The field of RNAi library development is rapidly advancing.