Related Experiment Video
Updated: May 25, 2026

Selective Capture of 5-hydroxymethylcytosine from Genomic DNA
Published on: October 5, 2012
Loss of 5-hydroxymethylcytosine is accompanied with malignant cellular transformation
Yotaro Kudo1, Keisuke Tateishi, Keisuke Yamamoto
1Department of Gastroenterology, Graduate School of Medicine, Research Center for Advanced Science and Technology, University of Tokyo, Tokyo, Japan.
Abstract:
Dysregulated DNA methylation followed by abnormal gene expression is an epigenetic hallmark in cancer. DNA methylation is catalyzed by DNA methyltransferases, and the aberrant expression or mutations of DNA methyltransferase genes are found in human neoplasm. The enzymes for demethylating 5-methylcytosine were recently identified, and the biological significance of DNA demethylation is a current focus of scientific attention in various research fields. Ten-eleven translocation (TET) proteins have an enzymatic activity for the conversion from 5-methylcytosine to 5-hydroxymethylcytosine (5-hmC), which is an intermediate of DNA demethylation. The loss-of-function mutations of TET2 gene were reported in myeloid malignancies, suggesting that impaired TET-mediated DNA demethylation could play a crucial role in tumorigenesis. It is still unknown, however, whether DNA demethylation is involved in biological properties in solid cancers. Here, we show the loss of 5-hmC in a broad spectrum of solid tumors: for example, a significant reduction of 5-hmC was found in 72.7% of colorectal cancers (CRCs) and 75% of gastric cancers compared to background tissues. TET1 expression was decreased in half of CRCs, and a large part of them was followed by the loss of 5-hmC. These findings suggest that the amount of 5-hmC in tumors is often reduced via various mechanisms, including the downregulation of TET1. Consistently, in the in vitro experiments, the downregulation of TET1 was clearly induced by oncogene-dependent cellular transformation, and loss of 5-hmC was seen in the transformed cells. These results suggest the critical roles of aberrant DNA demethylation for oncogenic processes in solid tissues.
Insights
Epigenetic alterations, including DNA methylation changes, are key in cancer. This study reveals a loss of 5-hydroxymethylcytosine (5-hmC) in solid tumors, linked to TET1 downregulation, suggesting a role for aberrant DNA demethylation in cancer development.
Area of Science:
- Epigenetics
- Cancer Biology
- Molecular Oncology
Background:
- Dysregulated DNA methylation is a hallmark of cancer, impacting gene expression.
- DNA methyltransferases catalyze DNA methylation, and their aberrant forms are found in neoplasms.
- DNA demethylation, particularly involving 5-hydroxymethylcytosine (5-hmC) generated by Ten-eleven translocation (TET) proteins, is an emerging area of research.
Purpose of the Study:
- To investigate the role of DNA demethylation, specifically 5-hmC levels and TET protein expression, in solid tumors.
- To determine if impaired DNA demethylation contributes to the biological properties of solid cancers.
Main Methods:
- Analysis of 5-hmC levels in various solid tumors, including colorectal cancers (CRCs) and gastric cancers, compared to normal tissues.
- Assessment of TET1 expression in CRCs.
- In vitro experiments to study the effect of oncogene-dependent cellular transformation on TET1 expression and 5-hmC levels.
Main Results:
- A significant reduction in 5-hmC was observed in a large proportion of colorectal (72.7%) and gastric (75%) cancers.
- TET1 expression was decreased in approximately half of CRCs, often correlating with the loss of 5-hmC.
- In vitro studies showed that oncogene-induced cellular transformation led to TET1 downregulation and subsequent loss of 5-hmC.
Conclusions:
- Aberrant DNA demethylation, characterized by reduced 5-hmC levels, is prevalent in solid tumors.
- Downregulation of TET1 is one mechanism contributing to the loss of 5-hmC in cancer.
- These findings highlight the critical role of impaired DNA demethylation in the oncogenic processes of solid cancers.
Related Concept Videos
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Abnormal Proliferation
Induced Pluripotent Stem Cells
Somatic cells are...
Epigenetic Regulation
X-chromosome...
Epigenetic Regulation

