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TDP-43 promotes microRNA biogenesis as a component of the Drosha and Dicer complexes
Yukio Kawahara1, Ai Mieda-Sato
1Laboratory of RNA Function, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan. ykawahara@rna.med.osaka-u.ac.jp
Abstract:
Although aberrant microRNA (miRNA) expression is linked to human diseases including cancer, the mechanisms that regulate the expression of each individual miRNA remain largely unknown. TAR DNA-binding protein-43 (TDP-43) is homologous to the heterogeneous nuclear ribonucleoproteins (hnRNPs), which are involved in RNA processing, and its abnormal cellular distribution is a key feature of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD), two neurodegenerative diseases. Here, we show that TDP-43 facilitates the production of a subset of precursor miRNAs (pre-miRNAs) by both interacting with the nuclear Drosha complex and binding directly to the relevant primary miRNAs (pri-miRNAs). Furthermore, cytoplasmic TDP-43, which interacts with the Dicer complex, promotes the processing of some of these pre-miRNAs via binding to their terminal loops. Finally, we show that involvement of TDP-43 in miRNA biogenesis is indispensable for neuronal outgrowth. These results support a previously uncharacterized role for TDP-43 in posttranscriptional regulation of miRNA expression in both the nucleus and the cytoplasm.
Insights
TAR DNA-binding protein-43 (TDP-43) regulates microRNA (miRNA) production in both the nucleus and cytoplasm. This protein is essential for neuronal development and its dysfunction is linked to neurodegenerative diseases like ALS and FTLD.
Area of Science:
- Molecular Biology
- Neuroscience
- Genetics
Background:
- Aberrant microRNA (miRNA) expression is implicated in various diseases, including cancer.
- The precise mechanisms governing individual miRNA expression remain largely unknown.
- Abnormal cellular distribution of TAR DNA-binding protein-43 (TDP-43) is a hallmark of neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD).
Purpose of the Study:
- To elucidate the role of TDP-43 in microRNA (miRNA) biogenesis.
- To investigate the mechanisms by which TDP-43 regulates miRNA production.
- To determine the functional significance of TDP-43 in miRNA processing and neuronal development.
Main Methods:
- Investigated TDP-43 interactions with the Drosha and Dicer complexes.
- Analyzed TDP-43 binding to primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs).
- Assessed the impact of TDP-43 on miRNA biogenesis and neuronal outgrowth.
Main Results:
- TDP-43 facilitates precursor miRNA (pre-miRNA) production by interacting with the nuclear Drosha complex and binding to primary miRNAs (pri-miRNAs).
- Cytoplasmic TDP-43 promotes pre-miRNA processing through interaction with the Dicer complex and binding to pre-miRNA terminal loops.
- TDP-43's role in miRNA biogenesis is critical for neuronal outgrowth.
Conclusions:
- TDP-43 plays a previously unrecognized role in the posttranscriptional regulation of miRNA expression.
- TDP-43 regulates miRNA biogenesis in both the nucleus and the cytoplasm.
- Dysregulation of TDP-43 in miRNA biogenesis may contribute to neurodegenerative diseases.
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