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Updated: May 25, 2026

Molecular Modulation by Lentivirus-Delivered Specific shRNAs in Endoplasmic Reticulum Stressed Neurons
Published on: April 24, 2021
Different mechanisms preserve translation of programmed cell death 8 and JunB in virus-infected endothelial cells
Huimiao Jiang1, Hansjörg Schwertz, Douglas I Schmid
1Division of Vascular Surgery, University of Utah, Salt Lake City, USA.
Objective:
Translation initiation of eukaryotic mRNAs typically occurs by cap-dependent ribosome scanning mechanism. However, certain mRNAs are translated by ribosome assembly at internal ribosome entry sites (IRESs). Whether IRES-mediated translation occurs in stressed primary human endothelial cells (ECs) is unknown.
Methods And Results:
We performed microarray analysis of polyribosomal mRNA from ECs to identify IRES-containing mRNAs. Cap-dependent translation was disabled by poliovirus (PV) infection and confirmed by loss of polysome peaks, detection of eukaryotic initiation factor (eIF) 4G cleavage, and decreased protein synthesis. We found that 87.4% of mRNAs were dissociated from polysomes in virus-infected ECs. Twelve percent of mRNAs remained associated with polysomes, and 0.6% were enriched ≥2-fold in polysome fractions from infected ECs. Quantitative reverse transcription-polymerase chain reaction confirmed the microarray findings for 31 selected mRNAs. We found that enriched polysome associations of programmed cell death 8 (PDCD8) and JunB mRNA resulted in increased protein expression in PV-infected ECs. The presence of IRESs in the 5' untranslated region of PDCD8 mRNA, but not of JunB mRNA, was confirmed by dicistronic analysis.
Conclusions:
We show that microarray profiling of polyribosomal mRNA transcripts from PV-infected ECs successfully identifies mRNAs whose translation is preserved in the face of stress-induced, near complete cessation of cap-dependent initiation. Nevertheless, internal ribosome entry is not the only mechanism responsible for this privileged translation.
Insights
Stressful conditions like poliovirus infection halt most cap-dependent translation in endothelial cells. However, some messenger RNAs (mRNAs) utilize internal ribosome entry sites (IRES) for continued protein production, revealing alternative translation pathways.
Area of Science:
- Molecular Biology
- Virology
- Cell Biology
Background:
- Eukaryotic mRNA translation typically relies on cap-dependent ribosome scanning.
- Internal ribosome entry sites (IRES) allow for cap-independent translation initiation.
- The role of IRES-mediated translation in stressed primary human endothelial cells (ECs) was previously unknown.
Purpose of the Study:
- To investigate whether IRES-mediated translation occurs in stressed primary human endothelial cells.
- To identify specific mRNAs that are translated via IRES during stress conditions.
Main Methods:
- Microarray analysis of polyribosomal mRNA from poliovirus (PV)-infected ECs.
- Confirmation of cap-dependent translation inhibition by assessing eukaryotic initiation factor (eIF) 4G cleavage and protein synthesis.
- Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) for validating microarray data.
- Dicistronic analysis to confirm the presence and function of IRES elements.
Main Results:
- PV infection significantly reduced cap-dependent translation, with 87.4% of mRNAs dissociating from polysomes.
- Twelve percent of mRNAs remained polysome-associated, and 0.6% were significantly enriched.
- Programmed cell death 8 (PDCD8) and JunB mRNAs showed enriched polysome association and increased protein expression.
- IRES elements were confirmed in the 5' untranslated region of PDCD8 mRNA, but not JunB mRNA.
Conclusions:
- Microarray profiling of polyribosomal mRNA in PV-infected ECs can identify mRNAs with preserved translation during stress.
- Internal ribosome entry is a mechanism for privileged translation under stress-induced cap-dependent initiation cessation.
- Other mechanisms, beyond IRES, may also contribute to maintaining translation under cellular stress.
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