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Large-scale Gene Knockdown in C. elegans Using dsRNA Feeding Libraries to Generate Robust Loss-of-function Phenotypes
Published on: September 25, 2013
Transgene-mediated cosuppression and RNA interference enhance germ-line apoptosis in Caenorhabditis elegans
Adele Adamo1, Alexander Woglar, Nicola Silva
1Consiglio Nazionale delle Ricerche-Institute of Genetics and Biophysics A. Buzzati-Traverso, 80131 Naples, Italy.
Abstract:
Introduction of multiple copies of a germ-line-expressed gene elicits silencing of the corresponding endogenous gene during Caenorhabditis elegans oogenesis; this process is referred to as germ-line cosuppression. Transformed plasmids assemble into extrachromosomal arrays resembling extra minichromosomes with repetitive structures. Loss of the transgene extrachromosomal array leads to reversion of the silencing phenomenon. Cosuppression and RNAi depend upon some of the same genes. In the C. elegans germ line, about half the cells undergo a physiological programmed cell death that shares most genetic requirements with somatic apoptosis. In addition, apoptosis is stimulated by DNA damage and synaptic failure mediated through different apoptotic checkpoints. We found that both germ-line cosuppression and RNAi of germ-line-expressed genes enhance apoptosis during C. elegans oogenesis. In contrast, apoptosis is not enhanced by extrachromosomal arrays carrying genes not driven by germ-line-specific promoters that thus do not elicit transgene-mediated cosuppression/silencing. Similarly, introduction of doubled-stranded RNA that shares no homology with endogenous genes has no effect on apoptosis. "Silencing-induced apoptosis" is dependent upon sir-2.1 and cep-1 (the worm p53 ortholog), and is accompanied by a rise in RAD-51 foci, a marker for ongoing DNA repair, indicating induction of DNA double-strand breaks. This finding suggests that the DNA damage-response pathway is involved. RNAi and cosuppression have been postulated as defense mechanisms against genomic intruders. We speculate that the mechanism here described may trigger the elimination of germ cells that have undergone viral infection or transposon activation.
Insights
Germ-line cosuppression and RNA interference (RNAi) in C. elegans oogenesis trigger apoptosis, a programmed cell death. This silencing-induced apoptosis involves DNA damage response pathways and may eliminate cells with viral infections or transposon activation.
Area of Science:
- Developmental Biology
- Genetics
- Molecular Biology
Background:
- Germ-line cosuppression silences endogenous genes when multiple copies of a gene are introduced during C. elegans oogenesis.
- Transformed plasmids form extrachromosomal arrays, and their loss reverts the silencing.
- Cosuppression and RNA interference (RNAi) share genetic dependencies.
Purpose of the Study:
- To investigate the effect of germ-line cosuppression and RNAi on apoptosis during C. elegans oogenesis.
- To elucidate the molecular mechanisms underlying silencing-induced apoptosis.
Main Methods:
- Introduction of multiple copies of germ-line-expressed genes to induce cosuppression.
- Utilized RNA interference (RNAi) targeting germ-line-expressed genes.
- Assessed apoptosis levels and DNA damage markers (RAD-51 foci) in C. elegans oocytes.
- Investigated the role of sir-2.1 and cep-1 (worm p53 ortholog) in silencing-induced apoptosis.
Main Results:
- Germ-line cosuppression and RNAi significantly enhance apoptosis during C. elegans oogenesis.
- Apoptosis is not enhanced by arrays lacking germ-line promoters or by non-homologous dsRNA.
- Silencing-induced apoptosis requires sir-2.1 and cep-1 and is associated with increased RAD-51 foci, indicating DNA double-strand breaks.
Conclusions:
- Germ-line cosuppression and RNAi activate a DNA damage-response pathway leading to apoptosis in C. elegans oocytes.
- This mechanism may function as a defense against genomic intruders like viruses or transposons.
- The findings highlight a link between gene silencing, DNA damage, and programmed cell death in the germ line.
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