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Updated: May 24, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Species and staphylococcal cassette chromosome mec (SCCmec) diversity among methicillin-resistant non-Staphylococcus
Wannes Vanderhaeghen1, Stien Vandendriessche, Florence Crombé
1Department of General Bacteriology, Veterinary and Agrochemical Research Centre, Groeselenbergstraat 99, B-1180 Ukkel, Belgium. Wannes.Vanderhaeghen@var.fgov.be
Abstract:
While methicillin-resistant Staphylococcus aureus (MRSA) ST398 is known to be widespread in pig farms, few studies have investigated the species diversity and SCCmec types of methicillin-resistant non-S. aureus staphylococci (MRNAS) residing in the nose of pigs. We examined nasal swab samples of 200 pigs originating from 10 Belgian pig farms previously found positive for MRSA ST398. Suspected staphylococcal isolates were subjected to a 16S rRNA-mecA-nuc PCR. Confirmed MRNAS were genotypically identified to the species level and investigated with a SCCmec typing PCR. MRNAS (n=72) were detected on all 10 farms and were carried by 29.5% of the pigs. Seven MRNAS species were found: Staphylococcus epidermidis (38.9%), Staphylococcus sciuri (18.1%), Staphylococcus pasteuri (18.1%), Staphylococcus rostri (12.5%), Staphylococcus warneri (8.3%), Staphylococcus haemolyticus (2.7%) and Staphylococcus hominis (1.4%). SCCmec cassettes were of type IVa (29.2%), type IVc (25%), type III (22.2%), type V (5.6%) or could not be assigned to any of the known types (NT types) (18.1%). Five distinct NT types were found. The predominance of methicillin-resistant S. epidermidis (MRSE) in our samples is remarkable, as MRSE is mainly associated with humans. The finding of three different SCCmec elements (IVa, V, NT type 1) in MRNAS that also prevail or predominate in MRSA ST398 shows that MRNAS might be an important SCCmec reservoir for MRSA in pigs. Yet, the occurrence of multiple other SCCmec types illustrates that further studies are required to understand the presence and spread of SCCmec in methicillin-resistant staphylococci from animals.
Insights
Methicillin-resistant non-S. aureus staphylococci (MRNAS) are common in pig noses, with diverse species and SCCmec types found. These MRNAS may act as a reservoir for MRSA ST398, highlighting the need for further research.
Area of Science:
- Veterinary Microbiology
- Antimicrobial Resistance
- Molecular Epidemiology
Background:
- Methicillin-resistant Staphylococcus aureus (MRSA) ST398 is prevalent in pig farms.
- Limited research exists on methicillin-resistant non-S. aureus staphylococci (MRNAS) in pigs.
- Understanding MRNAS diversity and resistance mechanisms is crucial for One Health approaches.
Purpose of the Study:
- To investigate the species diversity of MRNAS in pig nasal microbiota.
- To determine the types of SCCmec elements present in these MRNAS.
- To assess the potential role of MRNAS as a reservoir for MRSA in swine.
Main Methods:
- Nasal swabs from 200 pigs on 10 Belgian farms were analyzed.
- 16S rRNA, mecA, and nuc PCR were used for staphylococcal identification.
- MRNAS isolates underwent species identification and SCCmec typing PCR.
Main Results:
- MRNAS were detected in 29.5% of pigs across all farms.
- Seven MRNAS species were identified, with Staphylococcus epidermidis predominating.
- Various SCCmec types (IVa, IVc, III, V, and novel NT types) were identified.
Conclusions:
- MRNAS are a significant component of the nasal microbiota in pigs.
- The presence of diverse SCCmec types in MRNAS suggests a potential reservoir for MRSA.
- Further studies are needed to elucidate the role of MRNAS in SCCmec element dissemination in animals.
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