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Updated: May 24, 2026

Preparation of Mycobacterium tuberculosis Culture Filtrate to Understand TB Pathogenesis
Published on: March 28, 2025
Mycobacterium tuberculosis ClpP1 and ClpP2 function together in protein degradation and are required for viability in
Ravikiran M Raju1, Meera Unnikrishnan, Daniel H F Rubin
1Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.
Abstract:
In most bacteria, Clp protease is a conserved, non-essential serine protease that regulates the response to various stresses. Mycobacteria, including Mycobacterium tuberculosis (Mtb) and Mycobacterium smegmatis, unlike most well studied prokaryotes, encode two ClpP homologs, ClpP1 and ClpP2, in a single operon. Here we demonstrate that the two proteins form a mixed complex (ClpP1P2) in mycobacteria. Using two different approaches, promoter replacement, and a novel system of inducible protein degradation, leading to inducible expression of clpP1 and clpP2, we demonstrate that both genes are essential for growth and that a marked depletion of either one results in rapid bacterial death. ClpP1P2 protease appears important in degrading missense and prematurely terminated peptides, as partial depletion of ClpP2 reduced growth specifically in the presence of antibiotics that increase errors in translation. We further show that the ClpP1P2 protease is required for the degradation of proteins tagged with the SsrA motif, a tag co-translationally added to incomplete protein products. Using active site mutants of ClpP1 and ClpP2, we show that the activity of each subunit is required for proteolysis, for normal growth of Mtb in vitro and during infection of mice. These observations suggest that the Clp protease plays an unusual and essential role in Mtb and may serve as an ideal target for antimycobacterial therapy.
Insights
Mycobacterium tuberculosis ClpP1P2 protease, essential for bacterial survival, degrades damaged proteins. Its unique role and essentiality make it a promising target for new antimycobacterial therapies.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Clp protease regulates stress responses in most bacteria but is typically non-essential.
- Mycobacteria possess two ClpP homologs, ClpP1 and ClpP2, within a single operon, differing from other prokaryotes.
Purpose of the Study:
- To investigate the essentiality and function of the ClpP1P2 protease complex in mycobacteria.
- To determine the role of ClpP1P2 in protein degradation and its implications for Mycobacterium tuberculosis (Mtb) growth and virulence.
Main Methods:
- Utilized promoter replacement and inducible protein degradation systems to study clpP1 and clpP2 gene expression.
- Employed active site mutants to assess the catalytic activity of ClpP1 and ClpP2 subunits.
- Investigated the degradation of missense peptides and SsrA-tagged proteins.
Main Results:
- Both clpP1 and clpP2 genes are essential for mycobacterial growth; depletion of either leads to rapid cell death.
- The ClpP1P2 protease degrades missense and prematurely terminated peptides, crucial for growth under translational stress.
- ClpP1P2 is required for degrading SsrA-tagged proteins, indicating a role in handling incomplete protein products.
- Enzymatic activity of both ClpP1 and ClpP2 subunits is necessary for proteolysis and Mtb growth in vitro and during mouse infection.
Conclusions:
- The ClpP1P2 protease complex plays an unusual and essential role in Mycobacterium tuberculosis.
- ClpP1P2's critical function in protein quality control and essentiality suggests it as a potential therapeutic target for antimycobacterial drugs.
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