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Updated: May 24, 2026

Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs
Published on: June 12, 2018
Microprocessor dynamics and interactions at endogenous imprinted C19MC microRNA genes
Clément Bellemer1, Marie-Line Bortolin-Cavaillé, Ute Schmidt
1Laboratoire de Biologie Moléculaire Eucaryote (LBME), Université Paul Sabatier (UPS), Université de Toulouse, 31000 Toulouse, France.
Abstract:
Nuclear primary microRNA (pri-miRNA) processing catalyzed by the DGCR8-Drosha (Microprocessor) complex is highly regulated. Little is known, however, about how microRNA biogenesis is spatially organized within the mammalian nucleus. Here, we image for the first time, in living cells and at the level of a single microRNA cluster, the intranuclear distribution of untagged, endogenously-expressed pri-miRNAs generated at the human imprinted chromosome 19 microRNA cluster (C19MC), from the environment of transcription sites to single molecules of fully released DGCR8-bound pri-miRNAs dispersed throughout the nucleoplasm. We report that a large fraction of Microprocessor concentrates onto unspliced C19MC pri-miRNA deposited in close proximity to their genes. Our live-cell imaging studies provide direct visual evidence that DGCR8 and Drosha are targeted post-transcriptionally to C19MC pri-miRNAs as a preformed complex but dissociate separately. These dynamics support the view that, upon pri-miRNA loading and most probably concomitantly with Drosha-mediated cleavages, Microprocessor undergoes conformational changes that trigger the release of Drosha while DGCR8 remains stably bound to pri-miRNA.
Insights
This study visualizes primary microRNA (pri-miRNA) processing in living cells, revealing how the DGCR8-Drosha Microprocessor complex interacts with pri-miRNAs at their genes. It shows Drosha dissociates while DGCR8 remains bound after processing.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Nuclear primary microRNA (pri-miRNA) processing by the DGCR8-Drosha Microprocessor complex is crucial but spatially uncharacterized in mammalian nuclei.
- Understanding the intranuclear organization of microRNA biogenesis is essential for comprehending gene regulation.
Purpose of the Study:
- To visualize the intranuclear distribution and dynamics of endogenously-expressed pri-miRNAs and the Microprocessor complex in living cells.
- To investigate the spatial organization of pri-miRNA processing at the human chromosome 19 microRNA cluster (C19MC).
Main Methods:
- Live-cell imaging of untagged, endogenously-expressed pri-miRNAs at the C19MC locus.
- Single-molecule imaging to track pri-miRNA and Microprocessor complex dynamics within the nucleus.
Main Results:
- A significant portion of the Microprocessor complex localizes to nascent C19MC pri-miRNAs near their transcription sites.
- DGCR8 and Drosha are recruited as a preformed complex to pri-miRNAs but dissociate independently.
- Drosha is released post-cleavage, while DGCR8 remains bound to the processed pri-miRNA.
Conclusions:
- Microprocessor complex dynamics during pri-miRNA processing involve conformational changes leading to Drosha release and stable DGCR8 binding.
- This study provides the first direct visual evidence of spatial organization in mammalian pri-miRNA processing.
- Findings offer insights into the regulation of microRNA biogenesis within the nucleus.
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