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Related Concept Videos

Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
Cooperative Binding of Transcription Regulators02:13

Cooperative Binding of Transcription Regulators

Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form dimers that...
Cooperative Binding of Transcription Regulators02:13

Cooperative Binding of Transcription Regulators

Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form dimers that...
GTPases and their Regulation02:14

GTPases and their Regulation

Guanine nucleotide-binding proteins (G-proteins), also known as GTPases, are a superfamily of proteins that regulate many cellular processes, such as cell signaling, vesicular transport, and the regulation of cell shape and motility. Mutation or dysfunction of these proteins can lead to disease. There are around 40,000 known G-proteins that can broadly be classified into two groups ‒  small G-proteins consisting of a single domain and large multi-domain G-proteins.
Large G-proteins, also known...
GTPases and their Regulation02:14

GTPases and their Regulation

Guanine nucleotide-binding proteins (G-proteins), also known as GTPases, are a superfamily of proteins that regulate many cellular processes, such as cell signaling, vesicular transport, and the regulation of cell shape and motility. Mutation or dysfunction of these proteins can lead to disease. There are around 40,000 known G-proteins that can broadly be classified into two groups ‒  small G-proteins consisting of a single domain and large multi-domain G-proteins.
Large G-proteins, also known...
Eukaryotic Evolution01:24

Eukaryotic Evolution

The endosymbiont theory is the most widely accepted theory of eukaryotic evolution; however, its progression is still somewhat debated. According to the nucleus-first hypothesis, the ancestral prokaryote first evolved a membrane to enclose DNA and form the nucleus. Conversely, the mitochondria-first hypothesis suggests that the nucleus was formed after endosymbiosis of mitochondria.
Contrary to the endosymbiont theory, the eukaryote-first hypothesis proposes that the simpler prokaryotic and...

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Related Experiment Video

Updated: May 24, 2026

Identifying the Binding Proteins of Small Ligands with the Differential Radial Capillary Action of Ligand Assay (DRaCALA)
09:26

Identifying the Binding Proteins of Small Ligands with the Differential Radial Capillary Action of Ligand Assay (DRaCALA)

Published on: March 19, 2021

Evolution goes GAGA: GAGA binding proteins across kingdoms.

Nathalie Berger1, Bertrand Dubreucq

  • 1Institut Jean-Pierre Bourgin, Versailles, France.

Biochimica Et Biophysica Acta
|March 20, 2012
PubMed
Summary

Chromatin-associated proteins regulate gene expression. Plant BBR/BPC proteins functionally converge with Drosophila GAGA factor, despite sequence divergence, highlighting conserved roles in development.

Area of Science:

  • Molecular Biology
  • Developmental Biology
  • Epigenetics

Background:

  • Chromatin-associated proteins (CAP) are vital for gene expression regulation and development in eukaryotes.
  • CAP are broadly categorized into histone-modifying enzymes and ATP-dependent chromatin remodelers.
  • These proteins exhibit significant sequence conservation across plant and animal kingdoms.

Purpose of the Study:

  • To review the functions of the Drosophila melanogaster GAGA factor (dGAF).
  • To discuss the role of plant BBR/BPC proteins in light of dGAF's functions.
  • To explore functional convergence between dGAF and plant BPC proteins despite sequence divergence.

Main Methods:

  • Literature review of existing studies on fly GAGA factor and plant BBR/BPC proteins.

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A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
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Detecting Protein Subcellular Localization by Green Fluorescence Protein Tagging and 4',6-Diamidino-2-phenylindole Staining in Caenorhabditis elegans
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Detecting Protein Subcellular Localization by Green Fluorescence Protein Tagging and 4',6-Diamidino-2-phenylindole Staining in Caenorhabditis elegans

Published on: July 30, 2018

Related Experiment Videos

Last Updated: May 24, 2026

Identifying the Binding Proteins of Small Ligands with the Differential Radial Capillary Action of Ligand Assay (DRaCALA)
09:26

Identifying the Binding Proteins of Small Ligands with the Differential Radial Capillary Action of Ligand Assay (DRaCALA)

Published on: March 19, 2021

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
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A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq

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Detecting Protein Subcellular Localization by Green Fluorescence Protein Tagging and 4',6-Diamidino-2-phenylindole Staining in Caenorhabditis elegans
09:36

Detecting Protein Subcellular Localization by Green Fluorescence Protein Tagging and 4',6-Diamidino-2-phenylindole Staining in Caenorhabditis elegans

Published on: July 30, 2018

  • Comparative analysis of protein functions and evolutionary conservation.
  • Identification of potential functional similarities and differences.
  • Main Results:

    • The Drosophila GAGA factor (dGAF) is essential for regulating homeobox genes and developmental events.
    • Plant BBR/BPC proteins appear to perform functions analogous to dGAF.
    • Functional convergence is observed between dGAF and plant BPC proteins, despite their distinct amino acid sequences.

    Conclusions:

    • Plant BBR/BPC proteins represent a functionally conserved counterpart to the Drosophila GAGA factor.
    • The study of BPC proteins in plants is crucial for understanding conserved developmental regulatory mechanisms.
    • Further research is suggested to elucidate the specific functions and mechanisms of plant BPC proteins.