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Updated: May 23, 2026

Parallel Measurement of Circadian Clock Gene Expression and Hormone Secretion in Human Primary Cell Cultures
Published on: November 11, 2016
Altered expression of the clock gene machinery in kidney cancer patients
Gianluigi Mazzoccoli1, Ada Piepoli, Massimo Carella
1Division of Internal Medicine and Chronobiology Unit, IRCCS Scientific Institute and Regional General Hospital Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy. g.mazzoccoli@tin.it
Background And Aim:
Kidney cancer is associated with alteration in the pathways regulated by von Hippel-Lindau protein and hypoxia inducible factor α. Tight interrelationships have been evidenced between hypoxia response pathways and circadian pathways. The dysregulation of the circadian clock circuitry is involved in carcinogenesis. The aim of our study was to evaluate the clock gene machinery in kidney cancer.
Methods:
mRNA expression levels of the clock genes ARNTL1, ARNTL2, CLOCK, PER1, PER2, PER3, CRY1, CRY2, TIMELESS, TIPIN and CSNK1E and of the clock controlled gene SERPINE1 were evaluated by DNA microarray assays and by qRT-PCR in primary tumor and matched nontumorous tissue collected from a cohort of 11 consecutive kidney cancer patients.
Results:
In kidney tumor tissue, we found down-regulation of PER2 (median=0.658, Q1-Q3=0.562-0.744, P<0.01), TIMELESS (median=0.705, Q1-Q3=0.299-1.330, P=0.04) and TIPIN (median=0.556, Q1-Q3=0.385-1.945, P=0.01), up-regulation of SERPINE1 (median=1.628, Q1-Q3=0.339-4.071, P=0.04), whereas the expression of ARNTL2 (median=0.605, Q1-Q3=0.318-1.738, P=0.74) and CSNK1E (median=0.927, Q1-Q3=0.612-2.321, P=0.33) did not differ. A statistically significant correlation was evidenced between mRNA levels of PER2 and CSNKIE (r=0.791, P<0.01), PER2 and TIPIN (r=0.729, P=0.01), PER2 and SERPINE1 (r=0.704, P=0.01), TIMELESS and TIPIN (r=0.605, P=0.04), TIMELESS and CSNKIE (r=0.637, P=0.03), TIPIN and CSNKIE (r=0.940, P<0.01).
Conclusion:
In kidney cancer, the circadian clock circuitry is deregulated and the altered expression of the clock genes might be involved in disease onset and progression.
Insights
Kidney cancer involves disrupted circadian clock genes, with specific genes like PER2, TIMELESS, and TIPIN showing altered expression. This deregulation may contribute to kidney cancer development and progression.
Area of Science:
- Oncology
- Molecular Biology
- Chronobiology
Background:
- Kidney cancer is linked to altered von Hippel-Lindau protein and hypoxia-inducible factor α pathways.
- There are known interrelationships between hypoxia response and circadian pathways.
- Circadian clock circuitry dysregulation is implicated in carcinogenesis.
Purpose of the Study:
- To investigate the expression of clock genes within kidney cancer tissue.
- To evaluate the circadian clock machinery's role in kidney cancer.
Main Methods:
- Assessed mRNA expression of core clock genes (ARNTL1, ARNTL2, CLOCK, PER1, PER2, PER3, CRY1, CRY2, TIMELESS, TIPIN, CSNK1E) and a clock-controlled gene (SERPINE1).
- Utilized DNA microarray assays and quantitative real-time PCR (qRT-PCR).
- Analyzed matched primary tumor and non-tumorous kidney tissue from 11 patients.
Main Results:
- Down-regulation of PER2, TIMELESS, and TIPIN observed in kidney tumors.
- Up-regulation of SERPINE1 noted in kidney tumors.
- Significant correlations found between PER2, TIMELESS, TIPIN, CSNK1E, and SERPINE1 mRNA levels.
Conclusions:
- The circadian clock circuitry is deregulated in kidney cancer.
- Altered expression of clock genes may play a role in kidney cancer onset and progression.
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