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Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...

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Related Experiment Video

Updated: May 23, 2026

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

Rabbit milk protein genes: from mRNA identification to chromatin structure.

G Jolivet1, N Daniel-Carlier, D Thépot

  • 1INRA, UMR 1198; ENVA; CNRS, FRE 2857, Biologie du Développement et Reproduction, Jouy en Josas F-78350, France.

Animal : an International Journal of Animal Bioscience
|March 27, 2012
PubMed
Summary
This summary is machine-generated.

Milk protein gene expression in mammary cells is crucial for nutrition and development. Advanced techniques like chromatin immunoprecipitation and transgenesis help study gene regulation and produce pharmaceuticals in milk.

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Method for the Isolation and Identification of mRNAs, microRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts using RIP-Chip
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Method for the Isolation and Identification of mRNAs, microRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts using RIP-Chip

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Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
11:19

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets

Published on: July 7, 2010

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Last Updated: May 23, 2026

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

Method for the Isolation and Identification of mRNAs, microRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts using RIP-Chip
13:34

Method for the Isolation and Identification of mRNAs, microRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts using RIP-Chip

Published on: September 29, 2012

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
11:19

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets

Published on: July 7, 2010

Area of Science:

  • Molecular Biology
  • Genetics
  • Biotechnology

Background:

  • Milk protein genes are highly expressed in mammary epithelial cells, crucial for human nutrition.
  • Mammary gland development during pregnancy provides models for studying gene expression influenced by hormones and extracellular matrix.
  • Technological advancements, from mRNA quantification to gene cloning and transfer, have enabled detailed study of milk protein gene regulation.

Purpose of the Study:

  • To review the methodologies and findings in understanding milk protein gene expression.
  • To highlight the role of regulatory elements and chromatin structure in gene control.
  • To discuss the application of transgenesis in studying gene function and biotechnological production of pharmaceuticals in milk.

Main Methods:

  • Early methods included mRNA quantification using translation and radioactive cDNA probes.
  • Gene cloning facilitated measurement of milk protein mRNAs and identification of transcription factors.
  • Chromatin immunoprecipitation (ChIP) is used to identify factors modifying chromatin structure during mammary gland development.
  • Transgenesis in cultured cells and animals is employed to study gene regulation and function.

Main Results:

  • Milk protein genes are regulated by multiple distal elements and chromatin modifications.
  • Hormones and extracellular matrix significantly influence gene expression in the mammary gland.
  • Transgenesis is a powerful tool for both understanding gene regulation and producing recombinant proteins in milk.
  • Optimized vectors using milk protein gene regulatory elements enhance recombinant protein yield.

Conclusions:

  • Understanding milk protein gene regulation is essential for both basic science and biotechnology.
  • ChIP and transgenesis are key techniques for elucidating gene control mechanisms and enabling pharmaceutical production.
  • Milk protein gene regulatory elements are valuable for optimizing the expression of recombinant proteins.