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Updated: May 23, 2026

Studying Cell Cycle-regulated Gene Expression by Two Complementary Cell Synchronization Protocols
Published on: June 6, 2017
Specific phase arrest of cell cycle restores cell viability against tRNA cleavage by killer toxin
Megumi Shigematsu1, Tetsuhiro Ogawa, Hiroko K Kitamoto
1Department of Biotechnology, The University of Tokyo, Yayoi, Tokyo 113-8657, Japan.
Abstract:
Zymocin and PaT are killer toxins that induce cell cycle arrest of sensitive yeast cells in G1 and S phase, respectively. Recent studies have revealed that these two toxins cleave specific tRNAs, indicating that the cell growth impairment is due to the tRNA cleavage. Additionally, we have previously shown that the active domain of colicin D (D-CRD), which also cleaves specific Escherichia coli tRNAs, statically impairs growth when expressed in yeast cells. To verify that phase-specific cell cycle arrest is also induced by the expression of D-CRD, D-CRD and the subunits of zymocin and PaT that have tRNA cleaving activity were expressed in yeast cells and cell cycle status was analyzed. Our results indicate that phase-specific arrest does not commonly occur by tRNA cleavage, and it saves the cell viability. Furthermore, the extent of protein synthesis impairment may determine the phase specificity of cell cycle arrest.
Insights
Killer toxins Zymocin and PaT arrest yeast cell cycles by cleaving transfer RNAs (tRNAs). This study investigated if colicin D (D-CRD) also causes phase-specific arrest, finding it does not commonly occur, suggesting protein synthesis levels dictate arrest specificity.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Zymocin and PaT are yeast killer toxins that induce cell cycle arrest.
- These toxins and colicin D (D-CRD) cleave specific transfer RNAs (tRNAs).
- Previous work showed D-CRD expression impairs yeast growth, but its effect on cell cycle phase specificity was unknown.
Purpose of the Study:
- To investigate whether D-CRD expression induces phase-specific cell cycle arrest in yeast.
- To determine if tRNA cleavage by toxins commonly leads to phase-specific cell cycle arrest.
- To explore the relationship between protein synthesis impairment and cell cycle arrest specificity.
Main Methods:
- Expression of D-CRD and tRNA-cleaving subunits of Zymocin and PaT in yeast.
- Analysis of yeast cell cycle status using flow cytometry.
- Assessment of protein synthesis impairment and cell viability.
Main Results:
- D-CRD expression did not induce a common phase-specific cell cycle arrest.
- Zymocin and PaT subunits also did not consistently cause phase-specific arrest.
- Cell viability was preserved despite tRNA cleavage.
- The degree of protein synthesis inhibition appeared to correlate with arrest specificity.
Conclusions:
- Phase-specific cell cycle arrest is not a common outcome of tRNA cleavage by these toxins.
- The extent of protein synthesis impairment is a key factor in determining cell cycle arrest specificity.
- Understanding tRNA cleavage mechanisms provides insights into cell growth regulation and viability.
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