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Updated: May 23, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Role of SUMO modification of human PCNA at stalled replication fork
Himabindu Gali1, Szilvia Juhasz, Monika Morocz
1Institute of Genetics, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.
Abstract:
DNA double-strand breaks (DSBs) can be generated not only by reactive agents but also as a result of replication fork collapse at unrepaired DNA lesions. Whereas ubiquitylation of proliferating cell nuclear antigen (PCNA) facilitates damage bypass, modification of yeast PCNA by small ubiquitin-like modifier (SUMO) controls recombination by providing access for the Srs2 helicase to disrupt Rad51 nucleoprotein filaments. However, in human cells, the roles of PCNA SUMOylation have not been explored. Here, we characterize the modification of human PCNA by SUMO in vivo as well as in vitro. We establish that human PCNA can be SUMOylated at multiple sites including its highly conserved K164 residue and that SUMO modification is facilitated by replication factor C (RFC). We also show that expression of SUMOylation site PCNA mutants leads to increased DSB formation in the Rad18(-/-) cell line where the effect of Rad18-dependent K164 PCNA ubiquitylation can be ruled out. Moreover, expression of PCNA-SUMO1 fusion prevents DSB formation as well as inhibits recombination if replication stalls at DNA lesions. These findings suggest the importance of SUMO modification of human PCNA in preventing replication fork collapse to DSB and providing genome stability.
Insights
SUMOylation of human proliferating cell nuclear antigen (PCNA) prevents DNA double-strand breaks (DSBs) during replication. This modification is crucial for maintaining genome stability by inhibiting replication fork collapse.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA double-strand breaks (DSBs) arise from replication stress and unrepaired lesions.
- Ubiquitylation of proliferating cell nuclear antigen (PCNA) aids damage bypass.
- SUMOylation of yeast PCNA regulates recombination via Srs2 helicase access.
Purpose of the Study:
- To investigate the role and mechanisms of PCNA SUMOylation in human cells.
- To determine if PCNA SUMOylation impacts genome stability and DNA repair pathways.
Main Methods:
- In vivo and in vitro characterization of human PCNA SUMOylation.
- Analysis of PCNA SUMOylation mutants in a Rad18(-/-) cell line.
- Assessment of DSB formation and recombination in response to SUMOylation.
Main Results:
- Human PCNA is SUMOylated at multiple sites, including K164, with replication factor C (RFC) facilitating the process.
- PCNA SUMOylation mutants exhibit increased DSB formation in Rad18(-/-) cells.
- PCNA-SUMO1 fusion prevents DSBs and inhibits recombination during replication stress.
Conclusions:
- SUMO modification of human PCNA is essential for preventing DSBs caused by replication fork collapse.
- PCNA SUMOylation plays a critical role in maintaining genome stability.
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