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Updated: May 23, 2026

mirMachine: A One-Stop Shop for Plant miRNA Annotation
Published on: May 1, 2021
Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis
Guodong Ren1, Xuemei Chen, Bin Yu
1Center for Plant Science Innovation and School of Biological Sciences, University of Nebraska, Lincoln, NE 68588-0660, USA.
Abstract:
HEN1-mediated 2'-O-methylation has been shown to be a key mechanism to protect plant microRNAs (miRNAs) and small interfering RNAs (siRNAs) as well as animal piwi-interacting RNAs (piRNAs) from degradation and 3' terminal uridylation [1-8]. However, enzymes uridylating unmethylated miRNAs, siRNAs, or piRNAs in hen1 are unknown. In this study, a genetic screen identified a second-site mutation hen1 suppressor1-2 (heso1-2) that partially suppresses the morphological phenotypes of the hypomorphic hen1-2 allele and the null hen1-1 allele in Arabidopsis. HESO1 encodes a terminal nucleotidyl transferase that prefers to add untemplated uridine to the 3' end of RNA, which is completely abolished by 2'-O-methylation. heso1-2 affects the profile of u-tailed miRNAs and siRNAs and increases the abundance of truncated and/or normal sized ones in hen1, which often results in increased total amount of miRNAs and siRNAs in hen1. In contrast, overexpressing HESO1 in hen1-2 causes more severe morphological defects and less accumulation of miRNAs. These results demonstrate that HESO1 is an enzyme uridylating unmethylated miRNAs and siRNAs in hen1. These observations also suggest that uridylation may destabilize unmethylated miRNAs through an unknown mechanism and compete with 3'-to-5' exoribonuclease activities in hen1. This study shall have implications on piRNA uridylation in hen1 in animals.
Insights
The HESO1 enzyme uridylates unmethylated microRNAs (miRNAs) and small interfering RNAs (siRNAs) in plants. This process destabilizes these RNAs, impacting their abundance and function.
Area of Science:
- Plant molecular biology
- RNA biology
- Epigenetics
Background:
- HEN1-mediated 2'-O-methylation protects plant and animal small RNAs from degradation.
- The enzymes responsible for uridylating unmethylated small RNAs in HEN1 mutants were previously unknown.
Purpose of the Study:
- To identify the enzyme responsible for uridylation of unmethylated small RNAs in Arabidopsis HEN1 mutants.
- To elucidate the role of this uridylation process in small RNA metabolism and stability.
Main Methods:
- Genetic screening to identify suppressors of hen1 mutations.
- Characterization of the identified suppressor gene HESO1.
- Analysis of small RNA profiles in wild-type, hen1, and HESO1-overexpressing Arabidopsis plants.
Main Results:
- A novel enzyme, HESO1, was identified as a terminal nucleotidyl transferase that adds uridines to the 3' end of unmethylated small RNAs.
- HESO1-mediated uridylation affects the profile and abundance of microRNAs (miRNAs) and small interfering RNAs (siRNAs) in hen1 mutants.
- Overexpression of HESO1 exacerbates morphological defects and reduces miRNA accumulation in hen1 mutants, suggesting uridylation can destabilize unmethylated miRNAs.
Conclusions:
- HESO1 is the primary enzyme responsible for uridylating unmethylated miRNAs and siRNAs in Arabidopsis.
- RNA uridylation may destabilize unmethylated small RNAs and potentially compete with exoribonuclease activity.
- Findings have implications for understanding piRNA uridylation in animals.
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