Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis

V Popescu1, M Battaglini, W S Hoogstrate

  • 1Department of Radiology, VU University Medical Center, Amsterdam, The Netherlands. v.popescu@vumc.nl

Neuroimage
|April 10, 2012
PubMed
Summary

Optimizing brain extraction with FSL-BET (Brain Extraction Tool) in MS patients improves atrophy measurements. Using BET option "B" with f=0.1 after neck slice removal yields the best results for brain extraction quality.

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