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Updated: May 23, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Site-specific phosphorylation protects glycogen synthase kinase-3β from calpain-mediated truncation of its N and C
Shanshan Ma1, Shaojun Liu, Qiaoying Huang
1Department of Pharmacology and Proteomics Center, Zhongshan School of Medicine, Sun Yat-sen University, 74 Zhongshan Road II, Guangzhou 510080, China.
Abstract:
Glycogen synthase kinase-3β (GSK-3β), a key regulator of neuronal apoptosis, is inhibited by the phosphorylation of Ser-9/Ser-389 and was recently shown to be cleaved by calpain at the N terminus, leading to its subsequent activation. In this study calpain was found to cleave GSK-3β not only at the N terminus but also at the C terminus, and cleavage sites were identified at residues Thr-38-Thr-39 and Ile-384-Gln-385. Furthermore, the cleavage of GSK-3β occurred in tandem with Ser-9 dephosphorylation during cerebellar granule neuron apoptosis. Increasing Ser-9 phosphorylation of GSK-3β by inhibiting phosphatase 1/2A or pretreating with purified active Akt inhibited calpain-mediated cleavage of GSK-3β at both N and C termini, whereas non-phosphorylatable mutant GSK-3β S9A facilitated its cleavage. In contrast, Ser-389 phosphorylation selectively inhibited the cleavage of GSK-3β at the C terminus but not the N terminus. Calpain-mediated cleavage resulted in three truncated products, all of which contained an intact kinase domain: ΔN-GSK-3β (amino acids 39-420), ΔC-GSK-3β (amino acids 1-384), and ΔN/ΔC-GSK-3β (amino acids 39-384). All three truncated products showed increased kinase and pro-apoptotic activity, with ΔN/ΔC-GSK-3β being the most active form. This observation suggests that the GSK-3β C terminus acts as an autoinhibitory domain similar to the N terminus. Taken together, these findings demonstrate that calpain-mediated cleavage activates GSK-3β by removing its N- and C-terminal autoinhibitory domains and that Ser-9 phosphorylation inhibits the cleavage of GSK-3β at both termini. In contrast, Ser-389 phosphorylation inhibits only C-terminal cleavage but not N-terminal cleavage. These findings also identify a mechanism by which site-specific phosphorylation and calpain-mediated cleavage operate in concert to regulate GSK-3β activity.
Insights
Calpain cleaves Glycogen synthase kinase-3β (GSK-3β) at both ends, activating it during neuronal apoptosis. Ser-9 phosphorylation prevents this cleavage, while Ser-389 phosphorylation only blocks C-terminal cleavage.
Area of Science:
- Neuroscience
- Molecular Biology
- Cell Biology
Background:
- Glycogen synthase kinase-3β (GSK-3β) regulates neuronal apoptosis.
- GSK-3β is activated by calpain cleavage and inhibited by Ser-9/Ser-389 phosphorylation.
Purpose of the Study:
- To investigate the dual role of calpain in GSK-3β cleavage at both N and C termini.
- To elucidate the interplay between GSK-3β phosphorylation and calpain-mediated activation during apoptosis.
Main Methods:
- Identification of GSK-3β cleavage sites by calpain.
- Analysis of GSK-3β cleavage and phosphorylation during cerebellar granule neuron apoptosis.
- Investigation of the effects of Ser-9 and Ser-389 phosphorylation on calpain-mediated cleavage using mutants and inhibitors.
Main Results:
- Calpain cleaves GSK-3β at both N-terminal (Thr-38-Thr-39) and C-terminal (Ile-384-Gln-385) sites.
- Cleavage occurs with Ser-9 dephosphorylation during apoptosis.
- Ser-9 phosphorylation inhibits cleavage at both termini; Ser-389 phosphorylation inhibits only C-terminal cleavage.
- Calpain-mediated cleavage generates active truncated forms of GSK-3β, with ΔN/ΔC-GSK-3β being the most potent.
Conclusions:
- Calpain-mediated cleavage activates GSK-3β by removing autoinhibitory N- and C-terminal domains.
- Site-specific phosphorylation and calpain cleavage coordinate to regulate GSK-3β activity.
- GSK-3β C-terminus functions as an autoinhibitory domain.
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