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Updated: May 23, 2026

Development and Application of Rapamycin-regulated Tyrosine Phosphatases
Published on: September 6, 2024
Selective ATP-competitive inhibitors of TOR suppress rapamycin-insensitive function of TORC2 in Saccharomyces
Abstract:
The target of rapamycin (TOR) is a critical regulator of growth, survival, and energy metabolism. The allosteric TORC1 inhibitor rapamycin has been used extensively to elucidate the TOR related signal pathway but is limited by its inability to inhibit TORC2. We used an unbiased cell proliferation assay of a kinase inhibitor library to discover QL-IX-55 as a potent inhibitor of S. cerevisiae growth. The functional target of QL-IX-55 is the ATP-binding site of TOR2 as evidenced by the discovery of resistant alleles of TOR2 through rational design and unbiased selection strategies. QL-IX-55 is capable of potently inhibiting both TOR complex 1 and 2 (TORC1 and TORC2) as demonstrated by biochemical IP kinase assays (IC(50) <50 nM) and cellular assays for inhibition of substrate YPK1 phosphorylation. In contrast to rapamycin, QL-IX-55 is capable of inhibiting TORC2-dependent transcription, which suggests that this compound will be a powerful probe to dissect the Tor2/TORC2-related signaling pathway in yeast.
Insights
Scientists discovered QL-IX-55, a novel inhibitor targeting both TORC1 and TORC2 complexes in yeast. This compound offers a powerful new tool for studying the Tor2/TORC2 signaling pathway, overcoming limitations of existing drugs like rapamycin.
Area of Science:
- Cell Biology
- Biochemistry
- Molecular Biology
Background:
- The target of rapamycin (TOR) pathway is crucial for regulating cell growth, survival, and metabolism.
- Rapamycin, an allosteric inhibitor, effectively targets TORC1 but cannot inhibit TORC2, limiting its utility in studying TORC2 signaling.
- Understanding TORC2 function requires novel inhibitors that can effectively block its activity.
Discussion:
- QL-IX-55 was identified through an unbiased screen of kinase inhibitors as a potent inhibitor of Saccharomyces cerevisiae growth.
- Resistance studies revealed that QL-IX-55 targets the ATP-binding site of TOR2.
- QL-IX-55 demonstrates potent inhibition of both TORC1 and TORC2, with IC(50) values below 50 nM in biochemical assays.
Key Insights:
- QL-IX-55 effectively inhibits TORC1 and TORC2, unlike rapamycin.
- The compound inhibits TORC2-dependent transcription, a function not achieved by rapamycin.
- Biochemical and cellular assays confirm QL-IX-55's potent inhibition of TOR kinase activity and substrate phosphorylation.
Outlook:
- QL-IX-55 serves as a valuable chemical probe for dissecting the Tor2/TORC2 signaling pathway in yeast.
- This inhibitor's ability to block both TOR complexes opens new avenues for research into TOR-mediated cellular processes.
- Further studies using QL-IX-55 can elucidate the specific roles of TORC2 in various cellular functions and potentially in disease states.
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