Related Experiment Video
Updated: May 23, 2026

Controlling the Size, Shape and Stability of Supramolecular Polymers in Water
Published on: August 2, 2012
Coupled-monomers in molecular assemblies: theory and application to the water tetramer, pentamer, and ring hexamer
1Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA.
Abstract:
We present extensions to the local-monomer (LMon) Model, a general quantum method to describe coupled intramolecular vibrational modes of a molecular cluster consisting of a set of monomers [Y. Wang and J. M. Bowman, J. Chem. Phys. 134, 154510 (2011)], to incorporate monomer-monomer coupling. A central aspect of the LMon model is a local normal-mode analysis, done for each monomer, perturbed by all other mononers. Monomer-monomer coupling is described by several approaches based on these normal-mode analyses. Two are Hückel-type models, where coupling constants for each intramolecular mode are determined non-empirically from normal-mode analyses. One model, the simple one, is limited to nearest-neighbor interactions. The second and more general one determines monomer-monomer couplings from the full and local-monomer Hessians, with no further assumptions. The simple approach is applied to the water tetramer, pentamer and ring hexamer. For the tetramer and ring hexamer cases, artificial degeneracies of the intramolecular energies in the LMon model, owing to the high symmetry of the cluster, are correctly lifted. The general approach to obtain coupling constants is illustrated for the ring hexamer, where new fundamental energies are reported. Other, more rigorous approaches are suggested but not implemented.
More Related Videos
06:35Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
Published on: February 15, 2016
09:34Synthesis of Information-bearing Peptoids and their Sequence-directed Dynamic Covalent Self-assembly
Published on: February 6, 2020
Related Concept Videos
Protein Complex Assembly
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Dehydration Synthesis
Dehydration synthesis (also called a condensation reaction) is the chemical process in which two molecules covalently link together to form a new molecule, along with the release of a water molecule. Many physiologically important compounds form by dehydration synthesis reactions, such as complex carbohydrates, proteins, DNA, and RNA.
Synthesis of carbohydrates
Sugar molecules are covalently linked together by dehydration synthesis. During the reaction, the hydroxyl (-OH) group from...
Molecular Models
Molecular Shapes
Two regions of electron density in a diatomic...
Assembly of Cytoskeletal Filaments
Polymers