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Updated: May 23, 2026

Sample Preparation for Single Cell Mass Spectrometry Metabolomics Studies: Combined Cell Washing, Quenching, Drying, and Storage
Published on: September 16, 2025
Mass spectrometric tools for cell and tissue studies
Raimo A Ketola1, Timo Mauriala
1Centre for Drug Research, Faculty of Pharmacy, University of Helsinki, FI-00014 Helsinki, Finland. raimo.ketola@helsinki.fi
This review explores mass spectrometry (MS) techniques for drug and metabolism studies in cells and tissues. It covers liquid chromatography-MS (LC/MS), mass spectrometric imaging (MSI), and direct cell content analysis.
Area of Science:
- Analytical Chemistry
- Pharmacology
- Biochemistry
Background:
- Mass spectrometry (MS) is crucial for identifying and quantifying organic molecules.
- Liquid chromatography (LC) coupled with MS (LC/MS) enhances analytical capabilities.
- Drug and metabolism studies require robust analytical methods for cellular and tissue analysis.
Purpose of the Study:
- To review various mass spectrometry (MS) techniques and methods applicable to drug and metabolism studies.
- To highlight the utility of MS in analyzing drug permeability, transporter proteins, and metabolic pathways in cellular models.
- To introduce emerging applications of MS, including mass spectrometric imaging (MSI) and direct cell content analysis.
Main Methods:
- Liquid chromatography-mass spectrometry (LC/MS) for permeability and transporter studies.
- Mass spectrometry (MS) for drug metabolism investigations in cell lines.
- Mass spectrometric imaging (MSI) for surface characterization of small molecules, peptides, and proteins.
- Direct MS-based techniques for analyzing cellular contents.
Main Results:
- LC/MS effectively assesses drug permeability across cell lines and evaluates ABC transporter protein activity.
- MS enables detailed studies of drug metabolism within cell lines.
- MSI provides spatial distribution data of drugs, metabolites, proteins, and peptides on surfaces.
- Direct MS techniques offer rapid analysis of intracellular components.
Conclusions:
- Mass spectrometry (MS) offers a versatile suite of techniques for comprehensive drug and metabolism research in biological systems.
- LC/MS, MSI, and direct cell analysis methods significantly advance the understanding of drug behavior and disposition in cells and tissues.
- These MS-based approaches are essential for modern pharmaceutical research and development.
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