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TumorHoPe: a database of tumor homing peptides
Pallavi Kapoor1, Harinder Singh, Ankur Gautam
1Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.
Background:
Cancer is responsible for millions of immature deaths every year and is an economical burden on developing countries. One of the major challenges in the present era is to design drugs that can specifically target tumor cells not normal cells. In this context, tumor homing peptides have drawn much attention. These peptides are playing a vital role in delivering drugs in tumor tissues with high specificity. In order to provide service to scientific community, we have developed a database of tumor homing peptides called TumorHoPe.
Description:
TumorHoPe is a manually curated database of experimentally validated tumor homing peptides that specifically recognize tumor cells and tumor associated microenvironment, i.e., angiogenesis. These peptides were collected and compiled from published papers, patents and databases. Current release of TumorHoPe contains 744 peptides. Each entry provides comprehensive information of a peptide that includes its sequence, target tumor, target cell, techniques of identification, peptide receptor, etc. In addition, we have derived various types of information from these peptide sequences that include secondary/tertiary structure, amino acid composition, and physicochemical properties of peptides. Peptides in this database have been found to target different types of tumors that include breast, lung, prostate, melanoma, colon, etc. These peptides have some common motifs including RGD (Arg-Gly-Asp) and NGR (Asn-Gly-Arg) motifs, which specifically recognize tumor angiogenic markers. TumorHoPe has been integrated with many web-based tools like simple/complex search, database browsing and peptide mapping. These tools allow a user to search tumor homing peptides based on their amino acid composition, charge, polarity, hydrophobicity, etc.
Conclusion:
TumorHoPe is a unique database of its kind, which provides comprehensive information about experimentally validated tumor homing peptides and their target cells. This database will be very useful in designing peptide-based drugs and drug-delivery system. It is freely available at http://crdd.osdd.net/raghava/tumorhope/.
Insights
TumorHoPe is a new database of tumor homing peptides, offering valuable information for developing targeted cancer therapies. This resource aids in designing effective peptide-based drugs and drug delivery systems.
Area of Science:
- Biochemistry
- Bioinformatics
- Oncology
Background:
- Cancer poses a significant global health and economic challenge, necessitating targeted therapeutic strategies.
- Developing drugs that selectively target tumor cells over normal cells is a critical unmet need.
- Tumor homing peptides offer a promising approach for specific drug delivery to tumor tissues.
Purpose of the Study:
- To create a comprehensive, manually curated database of experimentally validated tumor homing peptides.
- To provide a valuable resource for researchers in cancer drug development and delivery.
- To facilitate the design of novel peptide-based therapeutics.
Main Methods:
- Compiled tumor homing peptides from scientific literature, patents, and existing databases.
- Manually curated data for experimental validation and specificity towards tumor cells and microenvironment.
- Integrated web-based tools for searching and analyzing peptide properties, including sequence, target, and motifs.
Main Results:
- The TumorHoPe database contains 744 experimentally validated tumor homing peptides.
- Peptides target diverse tumor types including breast, lung, and prostate cancer.
- Identified common tumor-targeting motifs such as RGD and NGR, crucial for recognizing angiogenic markers.
Conclusions:
- TumorHoPe is a unique, freely accessible database for experimentally validated tumor homing peptides.
- The database provides comprehensive information essential for designing targeted peptide-based drugs and delivery systems.
- This resource will significantly aid the scientific community in advancing cancer therapy research.
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