Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

π Molecular Orbitals of the Allyl Cation and Anion01:18

π Molecular Orbitals of the Allyl Cation and Anion

An allyl group is a three-carbon conjugated system where the sp³-hybridized allylic carbon is bonded to a CH=CH2 group via a single bond. Allyl anions can be obtained by treating propene with a strong base that can deprotonate methyl groups. Allyl cations are formed as intermediates during substitution reactions involving allylic halides. In both cases, the hybridization of the allylic carbon changes from sp3 to sp2, giving rise to a carbon chain with three sp2-hybridized carbons, each with an...
Crystal Field Theory - Octahedral Complexes02:58

Crystal Field Theory - Octahedral Complexes

Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
π Electron Effects on Chemical Shift: Overview01:27

π Electron Effects on Chemical Shift: Overview

An applied magnetic field causes loosely bound π-electrons in organic molecules to circulate, producing a local or induced diamagnetic field over a large spatial volume. As the molecules tumble in solution, the field generated by π-electrons in spherical substituents results in a zero net field. However, the net field generated by π-electrons in non-spherical substituents is not zero. The effect of this induced field depends on the orientation of the molecule with respect to B0, resulting in...
Valence Bond Theory02:42

Valence Bond Theory

Coordination compounds and complexes exhibit different colors, geometries, and magnetic behavior, depending on the metal atom/ion and ligands from which they are composed. In an attempt to explain the bonding and structure of coordination complexes, Linus Pauling proposed the valence bond theory, or VBT, using the concepts of hybridization and the overlapping of the atomic orbitals. According to VBT, the central metal atom or ion (Lewis acid) hybridizes to provide empty orbitals of suitable...
Crystal Field Theory - Tetrahedral and Square Planar Complexes02:46

Crystal Field Theory - Tetrahedral and Square Planar Complexes

Tetrahedral Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Aromatic Hydrocarbon Anions: Structural Overview01:18

Aromatic Hydrocarbon Anions: Structural Overview

Neutral hydrocarbons like cyclopentadiene with an odd number of carbon atoms and one intervening CH2 group in the ring are not aromatic. Cyclopentadiene with 4 π electrons does not satisfy the 4n + 2 π electron rule. Additionally, the intervening CH2 group is sp3 hybridized and lacks a vacant p orbital, thereby interrupting the overlap of p orbitals in a continuous manner and preventing the delocalization of π electrons throughout the ring.
Due to the absence of continuous overlap of p...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Functional group corrections to the GFN2-xTB and PM6 semiempirical methods for noncovalent interactions in alkanes and alkenes.

The Journal of chemical physics·2023
Same author

Electrostatic penetration effects stand at the heart of aromatic π interactions.

Physical chemistry chemical physics : PCCP·2022
Same author

The PM6-FGC Method: Improved Corrections for Amines and Amides.

Molecules (Basel, Switzerland)·2022
Same author

New Approach for Correcting Noncovalent Interactions in Semiempirical Quantum Mechanical Methods: The Importance of Multiple-Orientation Sampling.

Journal of chemical theory and computation·2021
Same author

Curvature and size effects hinder halogen bonds with extended π systems.

Physical chemistry chemical physics : PCCP·2020
Same author

The relative position of π-π interacting rings notably changes the nature of the substituent effect.

Physical chemistry chemical physics : PCCP·2020

Related Experiment Video

Updated: May 22, 2026

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry
16:11

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry

Published on: June 8, 2022

A computational study of anion-modulated cation-π interactions.

Jorge A Carrazana-García1, Jesús Rodríguez-Otero, Enrique M Cabaleiro-Lago

  • 1Departamento de Química Física, Facultade de Química, Universidade de Santiago de Compostela, Campus de Lugo, Avenida Alfonso X El Sabio s/n, 27002 Lugo, Spain.

The Journal of Physical Chemistry. B
|May 5, 2012
PubMed
Summary

Computational studies reveal how anions affect cation-π interactions involving guanidinium and benzene. Anion influence is primarily through polarization, with effects depending on relative positions, impacting biological molecule interactions.

More Related Videos

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
11:04

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides

Published on: September 7, 2019

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

Related Experiment Videos

Last Updated: May 22, 2026

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry
16:11

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry

Published on: June 8, 2022

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
11:04

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides

Published on: September 7, 2019

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
08:54

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid

Published on: January 25, 2020

Area of Science:

  • Computational Chemistry
  • Supramolecular Chemistry
  • Biophysical Chemistry

Background:

  • Cation-π interactions are crucial in biological systems, involving positively charged amino acid residues and aromatic systems.
  • Understanding how other species, like anions, modulate these interactions is vital for comprehending molecular recognition and function.
  • Guanidinium is a biologically relevant cation, and benzene serves as a model π system.

Purpose of the Study:

  • To computationally investigate the influence of anions on cation-π complexes formed between guanidinium and benzene.
  • To analyze the energetic contributions and structural factors governing these ternary interactions.
  • To elucidate the role of polarization and three-body effects in anion-modulated cation-π interactions.

Main Methods:

  • Potential energy surface scans to map interaction landscapes.
  • Supermolecule calculations to determine interaction energies of ternary complexes (guanidinium-benzene-anion).
  • Local molecular orbital energy decomposition analysis (LMO-EDA) to dissect interaction energies into components (electrostatic, polarization, dispersion, etc.).

Main Results:

  • Anion interaction with the guanidinium-benzene complex is significantly influenced by polarization effects.
  • The relative positioning of the cation, anion, and π system dictates the nature of three-body interactions (cooperative or anticooperative).
  • Anticooperative three-body effects occur when the cation and anion are on the same side of the π system; cooperative effects occur when they are on opposite sides.

Conclusions:

  • Anions modulate cation-π interactions primarily through polarization, altering the binding energy and geometry.
  • The spatial arrangement of interacting species is critical for determining the overall binding stability and mechanism.
  • This study provides novel insights into anion-guanidinium-π system interactions, relevant to biological contexts.