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An alternative SEM drying method using hexamethyldisilazane (HMDS) for microbial cell attachment studies on

Nur Hazlin Hazrin-Chong1, Mike Manefield

  • 1Centre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia.

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Hexamethyldisilazane (HMDS) is a cost-effective and practical drying agent for preparing bacterial-coal specimens for scanning electron microscopy. This method preserves cell shape and reveals attachment points, offering advantages over critical point drying.

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Area of Science:

  • Microbiology
  • Materials Science
  • Microscopy

Background:

  • Microbial colonization of sub-bituminous coal is of interest due to its role in biofragmentation, fermentation, and methane generation.
  • Traditional critical point drying (CPD) for scanning electron microscopy (SEM) presents challenges with fragile coal samples and requires expensive equipment.

Purpose of the Study:

  • To evaluate hexamethyldisilazane (HMDS) as a simpler, more affordable alternative to CPD for preparing bacterial-on-coal specimens for SEM imaging.
  • To assess the effectiveness of HMDS in preserving bacterial cell morphology and attachment structures on sub-bituminous coal.

Main Methods:

  • Specimen preparation for SEM using hexamethyldisilazane (HMDS) as a drying agent.
  • Comparison of HMDS drying with critical point drying (CPD) for bacterial cells attached to sub-bituminous coal.
  • Microscopic analysis of bacterial cell shape, aggregation, and attachment points to coal surfaces.

Main Results:

  • HMDS effectively preserved the shape of individual and aggregated bacterial cells on coal, with minimal cell flattening.
  • The method allowed for clear observation of bacterial attachment points to the coal surface, facilitated by EPS shrinkage.
  • Positive results were observed for both short and long bacterial cells, even without glucose.

Conclusions:

  • Hexamethyldisilazane (HMDS) is a suitable and advantageous drying agent for SEM preparation of bacterial-on-coal specimens.
  • HMDS offers a safer, cheaper, and more practical alternative to CPD for studying microbial colonization on sub-bituminous coal.
  • The technique facilitates the study of cell-coal and cell-cell interactions through EPS structure observation.