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Adapting Gastrointestinal Organoids for Pathogen Infection and Single Cell Sequencing under Biosafety Level 3 (BSL-3) Conditions
Published on: September 10, 2021
Human bocavirus types 1, 2 and 3 in acute gastroenteritis of childhood
Minna Risku1, Minna Kätkä, Suvi Lappalainen
1Vaccine Research Center, Tampere University School of Medicine, Finland. minna.risku@uta.fi
Insights
Human bocavirus (HBoV) types 1, 2, and 3 were detected in children with acute gastroenteritis. HBoV2 was most common in single infections, suggesting a potential link to gastroenteritis requiring further study.
Area of Science:
- Virology
- Pediatrics
- Infectious Diseases
Background:
- Human bocavirus (HBoV) types 2 and 3 are recently identified and linked to childhood gastroenteritis.
- Previous studies have investigated common viral gastroenteritis pathogens in children.
Purpose of the Study:
- To investigate the prevalence of HBoV types 1, 2, 3, and 4 in children with acute gastroenteritis.
- To determine if HBoV infections occur as single or mixed infections.
Main Methods:
- Polymerase chain reaction (PCR) was used to detect HBoVs in 878 stool specimens from children with acute gastroenteritis and 112 controls.
- Positive amplicons were sequenced to identify specific HBoV types (HBoV1, HBoV2, HBoV3, HBoV4).
Main Results:
- HBoV was detected in 9.7% of gastroenteritis cases and 5.4% of controls.
- HBoV1, HBoV2, and HBoV3 were identified; HBoV4 was not detected.
- HBoV occurred as a single infection in 1.8% of cases, with HBoV2 being the most common type (50% of single infections).
Conclusions:
- Human bocaviruses are infrequently detected as sole causative agents in pediatric acute gastroenteritis.
- Further research is necessary to confirm a specific association between HBoV2 and gastroenteritis in children.
Aim:
Recently identified human bocavirus (HBoV) types 2 and 3 have been associated with acute gastroenteritis in children. We studied 878 stool specimens from children with acute gastroenteritis and 112 controls (43 children with unspecified fever, 33 with respiratory tract infection and 36 healthy children) for known HBoVs. The same specimens were previously studied for rotaviruses, noroviruses, sapoviruses, adenoviruses, coronaviruses and aichivirus.
Methods:
HBoVs were detected by PCR and positive amplicons were sequenced to identify HBoV1, HBoV2, HBoV3 and HBoV4.
Results:
HBoV of any type was found in 85 (9.7%) cases of acute gastroenteritis and in 6 (5.4%) controls. HBoV1 was detected in 49 (5.6%) cases and 2 (1.8%) controls, HBoV2 in 29 (3.3%) cases and 2 (1.8%) controls and HBoV3 in 8 (0.9%) cases and 2 (1.8%) controls. No HBoV4 was found. HBoV as a single infection was found in 16 (1.8%) cases and in 6 (5.4%) controls; in the remaining cases, a known gastroenteritis virus was also found. Among the single HBoV infections, HBoV2 was the most common type with 8 (50%) cases.
Conclusion:
HBoVs are rarely found alone in children with acute gastroenteritis. Further studies are warranted to confirm a possible specific association of HBoV2 with gastroenteritis.
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