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Updated: May 22, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
The MEKK1 SWIM domain is a novel substrate receptor for c-Jun ubiquitylation
Michael A Rieger1, Tyler Duellman, Christopher Hooper
1Department of Molecular Pharmacology and Therapeutics, Stritch School of Medicine, Loyola University Chicago, Maywod, IL 60153, USA.
Abstract:
MEKK1 [MAPK (mitogen-activated protein kinase)/ERK (extracellular-signal-regulated kinase) kinase kinase 1] is a MAP3K (MAPK kinase kinase) that regulates MAPK activation, and is the only known mammalian kinase that is also a ubiquitin ligase. MEKK1 contains a RING domain within its N-terminal regulatory region, and MEKK1 has been shown to ubiquitylate the AP-1 (activator protein 1) transcription factor protein c-Jun, but the mechanism by which MEKK1 interacts with c-Jun to induce ubiquitylation has not been defined. Proximal to the RING domain is a SWIM (SWI2/SNF2 and MuDR) domain of undetermined function. In the present study, we demonstrate that the MEKK1 SWIM domain, but not the RING domain, directly associates with the c-Jun DNA-binding domain, and that the SWIM domain is required for MEKK1-dependent c-Jun ubiquitylation. We further show that this MEKK1 SWIM-Jun interaction is specific, as SWIM domains from other proteins failed to bind c-Jun. We reveal that, although the Jun and Fos DNA-binding domains are highly conserved, the MEKK1 SWIM domain does not bind Fos. Finally, we identify the sequence unique to Jun proteins required for specific interaction with the MEKK1 SWIM domain. Therefore we propose that the MEKK1 SWIM domain represents a novel substrate-binding domain necessary for direct interaction between c-Jun and MEKK1 that promotes MEKK1-dependent c-Jun ubiquitylation.
Insights
The MEKK1 SWIM domain directly binds c-Jun and is essential for MEKK1-mediated c-Jun ubiquitylation, revealing a novel substrate-binding function critical for MAPK pathway regulation.
Area of Science:
- Molecular Biology
- Cell Signaling
- Ubiquitination
Background:
- MEKK1 (MAPK/ERK kinase kinase 1) is a unique mammalian kinase and ubiquitin ligase.
- MEKK1 regulates MAPK activation and ubiquitylates the transcription factor c-Jun.
- The precise mechanism of MEKK1-c-Jun interaction and ubiquitylation remains undefined.
Purpose of the Study:
- To elucidate the role of the MEKK1 SWIM domain in c-Jun ubiquitylation.
- To identify the specific interaction between MEKK1 and c-Jun.
- To characterize the substrate-binding capacity of the MEKK1 SWIM domain.
Main Methods:
- Protein-protein interaction assays to test MEKK1 domains and c-Jun binding.
- Analysis of MEKK1-dependent c-Jun ubiquitylation.
- Specificity testing of MEKK1 SWIM domain interactions with Jun and Fos proteins.
Main Results:
- The MEKK1 SWIM domain, not the RING domain, directly binds the c-Jun DNA-binding domain.
- The SWIM domain is crucial for MEKK1-dependent c-Jun ubiquitylation.
- MEKK1 SWIM domain exhibits specific binding to Jun proteins, not Fos, and a unique Jun sequence is identified for this interaction.
Conclusions:
- The MEKK1 SWIM domain functions as a novel substrate-binding domain.
- This domain mediates direct interaction between MEKK1 and c-Jun.
- The interaction is essential for MEKK1-dependent c-Jun ubiquitylation and MAPK pathway regulation.
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