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Updated: May 22, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Autophagy acts as a safeguard mechanism against G-quadruplex ligand-mediated DNA damage
Nicola Ivan Orlotti1, Graziella Cimino-Reale, Erika Borghini
1Department of Experimental Oncology and Molecular Medicine, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Abstract:
G-quadruplex ligands have attracted considerable interest as novel anticancer therapeutics due to their capability to interfere with guanosine-rich DNA/RNA sequences, such as telomeres. Elucidation of the structures of telomeric G-quadruplexes has led, in the past few years, to the rational development of effective G-quadruplex-stabilizing small molecules. In the present study, we showed that short-term exposure of melanoma cells to Ant1,5--an anthracene-based ligand able to stabilize telomeric G-quadruplexes--impaired cell growth without inducing cell senescence or apoptosis. Conversely, drug-treated cells were characterized by the occurrence of typical biochemical and morphological features associated with autophagy, such as an increase in the lipidated form of the autophagic marker LC3B and the accumulation of autophagosomes. Such drug-induced autophagy occurred as a consequence of DNA damage induction, at least in part dependent on drug-mediated telomere uncapping, through a pathway converging on the cyclin-dependent kinase inhibitor 1A (CDKN1A/p21). Indeed, melanoma cells depleted for CDKN1A did not show evidence of autophagic markers upon exposure to Ant1,5. The inhibition of autophagy by a pharmacologic inhibitor or through RNAi-mediated depletion of the ATG5 gene enhanced the cytotoxic activity of Ant1,5, as revealed by the marked increase in drug-induced apoptosis. Our data outline a molecular scenario in which G-quadruplex ligand-induced telomeric dysfunctions and DNA damage are translated into an autophagic response and provide the first evidence of autophagy as a safeguard mechanism activated by melanoma cells to counteract G-quadruplex ligand-mediated cellular stress.
Insights
Anticancer drug Ant1,5 stabilizes telomeric G-quadruplexes, impairing melanoma cell growth by inducing autophagy. Inhibiting this autophagy enhances the drug's cytotoxic effect, revealing autophagy as a protective response to G-quadruplex ligand stress.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- G-quadruplex ligands are promising anticancer agents targeting guanosine-rich DNA/RNA.
- Telomeric G-quadruplex structures have guided the development of small molecule stabilizers.
- Melanoma cells are a key focus for novel therapeutic strategies.
Purpose of the Study:
- To investigate the effects of the G-quadruplex ligand Ant1,5 on melanoma cells.
- To elucidate the cellular response, including autophagy, to Ant1,5 treatment.
- To determine the role of autophagy in melanoma cell survival under G-quadruplex ligand stress.
Main Methods:
- Short-term exposure of melanoma cells to Ant1,5.
- Assessment of cell growth, senescence, and apoptosis.
- Analysis of autophagy markers (LC3B, autophagosomes).
- Investigation of the role of CDKN1A/p21 and ATG5 in the cellular response.
- Pharmacological inhibition and RNAi-mediated depletion of autophagy components.
Main Results:
- Ant1,5 impaired melanoma cell growth without inducing senescence or apoptosis.
- Cells exhibited increased autophagy markers (LC3B, autophagosomes) upon Ant1,5 exposure.
- Autophagy induction was linked to DNA damage and telomere uncapping, mediated by CDKN1A/p21.
- Depletion of CDKN1A/p21 abolished Ant1,5-induced autophagy.
- Inhibition of autophagy enhanced Ant1,5's cytotoxic effect, increasing apoptosis.
Conclusions:
- Ant1,5 triggers an autophagic response in melanoma cells as a consequence of telomeric G-quadruplex stabilization and DNA damage.
- Autophagy acts as a cellular safeguard mechanism against G-quadruplex ligand-induced stress in melanoma.
- Targeting autophagy in combination with G-quadruplex ligands may represent a novel therapeutic strategy for melanoma treatment.
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