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Updated: May 22, 2026

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
335.4 kb microduplication in chromosome band Xp11.2p11.3 associated with developmental delay, growth retardation,
Viola Alesi1, Marta Bertoli, Giuseppe Barrano
1S. Pietro Fatebenefratelli Hospital, UOSD Medical Genetics, Rome, Italy.
Abstract:
About 10% of causative mutations for mental retardation in male patients involve X chromosome (X-linked mental retardation, XLMR). We describe a case of a 3-year-old boy presenting with developmental delay, autistic features and growth and speech delay. Array-CGH analysis detected a microduplication on the X chromosome (Xp11.2p11.3), spanning 335.4 kb and including 3 known genes (ZNF81, ZNF182 and SPACA5). Genome-wide association studies show that approximately 30% of mutations causing XLMR are located in Xp11.2p11.3, where few pathogenic genes have been identified to date (such as ZNF41, PQB1 and ZNF81). ZNF81 codifies a zinc finger protein and mutations (non-sense mutations, deletions and structural rearrangements) involving this gene have already been described in association with mental retardation. Larger duplications in the same region have also been observed in association with mental retardation, and, in one case, the over-expression of ZNF81 has also been verified by mRNA quantification. No duplications of the single gene have been identified. To our knowledge, the microduplication found in our patient is the smallest ever described in Xp11.2p11.3. This suggests that the over-expression of ZNF81 could have pathological effects.
Insights
A small X chromosome microduplication in males is linked to developmental delays. This finding suggests ZNF81 gene over-expression may cause X-linked mental retardation.
Area of Science:
- Genetics
- Neurodevelopmental Disorders
- Human Molecular Genetics
Background:
- X-linked mental retardation (XLMR) accounts for approximately 10% of intellectual disability cases in males.
- The Xp11.2p11.3 region is implicated in a significant portion of XLMR cases, though specific pathogenic genes remain largely unidentified.
- ZNF81, a gene within this region, has been previously associated with mental retardation through various mutation types.
Observation:
- A 3-year-old boy presented with developmental delay, autistic features, and growth and speech delays.
- Array comparative genomic hybridization (array-CGH) identified a 335.4 kb microduplication on the X chromosome (Xp11.2p11.3).
- This microduplication encompasses the ZNF81, ZNF182, and SPACA5 genes.
Findings:
- The identified microduplication is the smallest reported in the Xp11.2p11.3 region to date.
- Mutations and larger duplications in this region, including those involving ZNF81, are known to be associated with mental retardation.
- Over-expression of ZNF81 has been previously observed in a related case.
Implications:
- This case suggests that even small microduplications in Xp11.2p11.3 can lead to developmental disorders.
- The findings point towards ZNF81 over-expression as a potential pathogenic mechanism in X-linked mental retardation.
- Further research is warranted to elucidate the role of ZNF81 in neurodevelopment and its contribution to XLMR.
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