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Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs
Published on: June 12, 2018
PABP and the poly(A) tail augment microRNA repression by facilitated miRISC binding
Francesca Moretti1, Constanze Kaiser, Agnieszka Zdanowicz-Specht
1European Molecular Biology Laboratory, Heidelberg, Germany.
Abstract:
Polyadenylated mRNAs are typically more strongly repressed by microRNAs (miRNAs) than their nonadenylated counterparts. Using a Drosophila melanogaster cell-free translation system, we found that this effect is mediated by the poly(A)-binding protein (PABP). miRNA repression was positively correlated with poly(A) tail length, but this stimulatory effect on repression was lost when translation was repressed by the tethered GW182 silencing domain rather than the miRNA-induced silencing complex (miRISC) itself. These findings are mechanistically explained by a notable function of PABP: it promotes association of miRISC with miRNA-regulated mRNAs. We also found that PABP association with mRNA rapidly diminished with miRISC recruitment and before detectable deadenylation. We integrated these data into a revised model for the function of PABP and the poly(A) tail in miRNA-mediated translational repression.
Insights
Polyadenylated mRNAs undergo stronger microRNA (miRNA) repression, a process mediated by poly(A)-binding protein (PABP). PABP promotes the association of miRNA-induced silencing complexes (miRISCs) with target mRNAs, enhancing repression.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Biology
Background:
- Polyadenylated mRNAs are generally repressed more effectively by microRNAs (miRNAs) than nonadenylated mRNAs.
- The poly(A) tail and associated proteins play a role in mRNA regulation and stability.
Purpose of the Study:
- To investigate the mechanism by which polyadenylation enhances miRNA-mediated translational repression.
- To elucidate the role of the poly(A)-binding protein (PABP) in this process.
Main Methods:
- Utilized a cell-free translation system from Drosophila melanogaster.
- Investigated the correlation between poly(A) tail length and miRNA repression efficiency.
- Examined the effect of the GW182 silencing domain versus the miRNA-induced silencing complex (miRISC) on repression.
- Monitored PABP and miRISC association with mRNA.
Main Results:
- miRNA repression strength positively correlated with poly(A) tail length.
- The stimulatory effect of the poly(A) tail on repression was dependent on the miRNA-induced silencing complex (miRISC) and not solely on the GW182 silencing domain.
- Poly(A)-binding protein (PABP) was found to promote the association of miRISC with miRNA-regulated mRNAs.
- PABP dissociation from mRNA occurred rapidly upon miRISC recruitment and preceding detectable deadenylation.
Conclusions:
- Poly(A)-binding protein (PABP) is a key mediator of enhanced miRNA repression for polyadenylated mRNAs.
- PABP facilitates miRISC recruitment to target mRNAs, thereby increasing translational repression efficiency.
- A revised model for PABP and poly(A) tail function in miRNA-mediated translational repression is proposed.
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