Electrostatically Embedded Many-Body Expansion for Neutral and Charged Metalloenzyme Model Systems
Elbek K Kurbanov1, Hannah R Leverentz, Donald G Truhlar
1Department of Medicinal Chemistry, Department of Chemistry, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 55414.
Journal of Chemical Theory and Computation
|May 29, 2012
Summary
The electrostatically embedded many-body (EE-MB) method accurately calculates bond energies in metal complexes. New guidelines improve EE-MB efficiency for inorganic systems, including metalloenzyme models.
Area of Science:
- Computational Chemistry
- Quantum Chemistry
- Inorganic Chemistry
Background:
- The electrostatically embedded many-body (EE-MB) method is established for cluster energy calculations.
- EE-MB has been extended to metal-ligand bonds in positively charged inorganic complexes.
- Accurate calculation of bond dissociation energies is crucial for understanding chemical reactivity and designing new materials.
Purpose of the Study:
- To present guidelines for optimizing EE-MB calculations on metal centers.
- To validate the EE-MB method for bond dissociation energies in neutral and negatively charged inorganic systems.
- To assess the performance of EE-MB for metalloenzyme active site models.
Main Methods:
- Development and application of four key guidelines for EE-MB calculations.
- Utilizing the electrostatically embedded three-body (EE-3B) variant of the method.
- Testing on a range of pentacoordinate and hexacoordinate zinc-containing systems.
Main Results:
- The EE-MB method, following the proposed guidelines, performs well for diverse inorganic coordination systems.
- The EE-3B method accurately reproduces bond dissociation energies.
- An average absolute error of 0.98 kcal/mol was achieved across 25 test cases.
Conclusions:
- The EE-MB method is a reliable and efficient approach for calculating bond dissociation energies in various inorganic coordination complexes.
- The developed guidelines enhance the accuracy and efficiency of EE-MB for metal-centered systems.
- This method shows promise for studying metalloenzyme active sites and related drug targets.
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