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Updated: May 21, 2026

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
A Screening Method for the ALK Fusion Gene in NSCLC
Yoshiko Murakami1, Tetsuya Mitsudomi, Yasushi Yatabe
1Department of Pathology and Molecular Diagnostics, Aichi Cancer Center Nagoya, Japan.
Identifying echinoderm microtubule-associated protein-like 4-anaplastic lymphoma kinase (ALK) fusions in lung cancer is key for targeted therapy. This review compares methods for detecting ALK fusions to improve patient selection for ALK inhibitors.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Significant advancements in lung cancer molecular pathogenesis and treatment have emerged.
- The echinoderm microtubule-associated protein-like 4-anaplastic lymphoma kinase (ALK) fusion gene, identified in non-small cell lung cancer (NSCLC) in 2007, led to targeted drug approval in 2011.
- ALK-fusion positive lung cancer represents a small subset, necessitating precise patient selection for ALK inhibitor efficacy.
Purpose of the Study:
- To review and compare current methods for detecting ALK fusions in lung cancer.
- To discuss the advantages and disadvantages of RT-PCR, FISH, and IHC for ALK fusion detection.
- To explore criteria for selecting patients most likely to harbor ALK fusions.
Main Methods:
- Review of existing literature on ALK fusion detection techniques in lung cancer.
- Comparative analysis of RT-PCR, fluorescent in situ hybridization (FISH), and immunohistochemistry (IHC).
- Discussion of patient selection strategies for ALK inhibitor therapy.
Main Results:
- FISH is considered the gold standard but no single method is perfect for detecting ALK genetic alterations.
- Each method (RT-PCR, FISH, IHC) presents unique advantages and limitations.
- Effective patient screening is critical for successful ALK inhibitor treatment.
Conclusions:
- Optimizing patient selection for ALK inhibitors exemplifies personalized therapy in oncology.
- Accurate detection of ALK fusions is crucial for realizing the potential of targeted lung cancer treatments.
- Personalized therapy based on molecular profiling presents new challenges and opportunities in clinical oncology.
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