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Updated: May 21, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Cyclin-dependent kinases 4 and 6 control tumor progression and direct glucose oxidation in the pentose cycle
Miriam Zanuy1, Antonio Ramos-Montoya, Oscar Villacañas
1Department of Biochemistry and Molecular Biology, Faculty of Biology (Edifici Nou), University of Barcelona, Av. Diagonal 645, 08028 Barcelona, Spain. Institute of Biomedicine of the Universitat de Barcelona (IBUB) and CSIC Associated Unit, Barcelona, Spain.
Abstract:
Cyclin-dependent kinases CDK4 and CDK6 are essential for the control of the cell cycle through the G(1) phase. Aberrant expression of CDK4 and CDK6 is a hallmark of cancer, which would suggest that CDK4 and CDK6 are attractive targets for cancer therapy. Herein, we report that calcein AM (the calcein acetoxymethyl-ester) is a potent specific inhibitor of CDK4 and CDK6 in HCT116 human colon adenocarcinoma cells, inhibiting retinoblastoma protein (pRb) phosphorylation and inducing cell cycle arrest in the G(1) phase. The metabolic effects of calcein AM on HCT116 cells were also evaluated and the flux between the oxidative and non-oxidative branches of the pentose phosphate pathway was significantly altered. To elucidate whether these metabolic changes were due to the inhibition of CDK4 and CDK6, we also characterized the metabolic profile of a CDK4, CDK6 and CDK2 triple knockout of mouse embryonic fibroblasts. The results show that the metabolic profile associated with the depletion of CDK4, CDK6 and CDK2 coincides with the metabolic changes induced by calcein AM on HCT116 cells, thus confirming that the inhibition of CDK4 and CDK6 disrupts the balance between the oxidative and non-oxidative branches of the pentose phosphate pathway. Taken together, these results indicate that low doses of calcein can halt cell division and kill tumor cells. Thus, selective inhibition of CDK4 and CDK6 may be of greater pharmacological interest, since inhibitors of these kinases affect both cell cycle progression and the robust metabolic profile of tumors.
Insights
Calcein AM effectively inhibits cyclin-dependent kinases CDK4 and CDK6, halting cancer cell division and altering cellular metabolism. This discovery highlights selective CDK4/6 inhibition as a promising cancer therapy strategy.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Cyclin-dependent kinases CDK4 and CDK6 are crucial regulators of the G1 phase of the cell cycle.
- Their aberrant expression is a common characteristic of many cancers, making them significant therapeutic targets.
Purpose of the Study:
- To investigate calcein AM as a specific inhibitor of CDK4 and CDK6.
- To determine the effects of calcein AM on cell cycle progression and cellular metabolism.
- To confirm the role of CDK4/6 inhibition in observed metabolic alterations.
Main Methods:
- Calcein AM was used to treat HCT116 human colon adenocarcinoma cells.
- Inhibition of retinoblastoma protein (pRb) phosphorylation and cell cycle arrest were assessed.
- Metabolic profiling, including pentose phosphate pathway flux, was evaluated.
- A CDK4, CDK6, and CDK2 triple knockout mouse embryonic fibroblast model was used for comparison.
Main Results:
- Calcein AM specifically inhibited CDK4 and CDK6 in HCT116 cells, leading to G1 phase cell cycle arrest.
- Calcein AM significantly altered the flux between the oxidative and non-oxidative branches of the pentose phosphate pathway.
- Metabolic changes observed with calcein AM treatment mirrored those in the CDK-deficient cells, confirming CDK4/6 inhibition's role.
Conclusions:
- Selective inhibition of CDK4 and CDK6 by calcein AM halts cancer cell division and impacts tumor cell metabolism.
- Targeting CDK4/6 offers a dual approach to cancer therapy by affecting both cell cycle progression and metabolic pathways.
- Low-dose calcein AM demonstrates potential for halting cell division and inducing tumor cell death.
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