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Related Concept Videos

Next-generation Sequencing03:00

Next-generation Sequencing

The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Gene Duplication and Divergence02:37

Gene Duplication and Divergence

The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Sanger Sequencing01:57

Sanger Sequencing

DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
DNA Microarrays02:34

DNA Microarrays

Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...

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Related Experiment Video

Updated: May 21, 2026

Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

HomozygosityMapper2012--bridging the gap between homozygosity mapping and deep sequencing.

Dominik Seelow1, Markus Schuelke

  • 1NeuroCure Clinical Research Centre, Charité - Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany. dominik.seelow@charite.de

Nucleic Acids Research
|June 7, 2012
PubMed
Summary

HomozygosityMapper is a free web tool that simplifies homozygosity mapping for recessive traits. This updated version supports Next Generation Sequencing data and diverse species, aiding genetic research.

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Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
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Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

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Related Experiment Videos

Last Updated: May 21, 2026

Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
10:08

Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
09:14

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

Published on: June 28, 2018

Area of Science:

  • Genetics
  • Bioinformatics

Background:

  • Homozygosity mapping is crucial for identifying recessive traits in consanguineous families.
  • Existing tools may lack flexibility in data input and analysis scope.

Purpose of the Study:

  • To introduce an enhanced version of HomozygosityMapper, a web-based tool for homozygosity mapping.
  • To improve the analysis of genetic data for identifying disease-related genes.

Main Methods:

  • HomozygosityMapper accepts genotype and deep sequencing data (including *.vcf files).
  • It identifies shared homozygous regions in affected individuals and integrates with the GeneDistiller candidate gene search engine.
  • New features include support for rodents and farm animals, extended analysis options, and exportable files for targeted sequencing and linkage analysis.

Main Results:

  • The new HomozygosityMapper version efficiently processes various data types, including Next Generation Sequencing data.
  • It offers expanded species support and refined analysis capabilities for single families and loss of heterozygosity studies.
  • The tool facilitates the generation of targeted enrichment and linkage analysis files, streamlining downstream research.

Conclusions:

  • HomozygosityMapper provides a comprehensive and user-friendly platform for homozygosity mapping.
  • The updated version enhances genetic analysis by supporting diverse data and species, and offering advanced features for gene discovery.