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Updated: May 21, 2026

A Whole Mount In Situ Hybridization Method for the Gastropod Mollusc Lymnaea stagnalis
Published on: March 15, 2016
Gaetbulibacter lutimaris sp. nov., isolated from a tidal flat sediment
Jung-Hoon Yoon1, Soo-Young Lee2, Tae-Kwang Oh2
1Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Gyeonggi-do 440-746, Republic of Korea.
Abstract:
A Gram-stain-negative, aerobic, non-flagellated, non-gliding, rod-shaped bacterial strain, D1-y4(T), was isolated from a tidal flat sediment of the South Sea in South Korea and subjected to a polyphasic study. Strain D1-y4(T) grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2-3 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain D1-y4(T) belonged to the genus Gaetbulibacter, joining the type strain of Gaetbulibacter marinus, with which it exhibited 97.8 % similarity. Sequence similarities to Gaetbulibacter saemankumensis SMK-12(T) and Gaetbulibacter aestuarii KYW382(T) were 96.5 and 96.2 %, respectively. Strain D1-y4(T) contained MK-6 as the predominant menaquionone and iso-C15 : 0, iso-C15 : 1 G and anteiso-C15 : 0 as the major fatty acids. The major polar lipids were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain D1-y4(T) was 34.6 mol% and its mean DNA-DNA relatedness value with G. marinus KCTC 23046(T) was 7 %. The phylogenetic and genetic distinctiveness and differential phenotypic properties revealed that strain D1-y4(T) is distinguishable from the three recognized Gaetbulibacter species. On the basis of the data presented here, strain D1-y4(T) is considered to represent a novel species of the genus Gaetbulibacter, for which the name Gaetbulibacter lutimaris sp. nov. is proposed. The type strain is D1-y4(T) ( = KCTC 23716(T) = CCUG 61504(T)).
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