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Related Concept Videos

Phylogenetic Trees03:21

Phylogenetic Trees

Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
Phylogenetic Trees03:21

Phylogenetic Trees

Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
Phylogeny01:23

Phylogeny

Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
Microbial Phylogeny01:28

Microbial Phylogeny

Understanding the evolutionary relationships among microorganisms is fundamental to microbial ecology and taxonomy. Phylogenetic trees are essential tools for inferring these relationships, relying primarily on comparative analyses of molecular sequences such as DNA, RNA, or proteins. In microbial studies, these trees typically depict the evolutionary paths of diverse bacterial and archaeal species by mapping genetic differences accumulated over time.Phylogenetic trees are composed of tips,...
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...

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A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees.

Huangkai Zhang1, Shenghan Gao, Martin J Lercher

  • 1CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences (CAS), No.7 Beitucheng West Road, Chaoyang District, 100029 Beijing, PR China.

Nucleic Acids Research
|June 15, 2012
PubMed
Summary
This summary is machine-generated.

EvolView is a web application for visualizing and managing phylogenetic trees. It offers customization, data linking, and publication-ready figure export for evolutionary biology research.

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Area of Science:

  • Computational Biology
  • Evolutionary Biology
  • Bioinformatics

Background:

  • Phylogenetic trees are crucial for understanding evolutionary relationships.
  • Managing and visualizing complex phylogenetic data can be challenging.
  • Existing tools may lack integrated features for customization and data management.

Purpose of the Study:

  • To introduce EvolView, a novel web application for phylogenetic tree visualization and management.
  • To provide researchers with an intuitive platform for customizing trees and integrating external datasets.
  • To facilitate the creation of publication-ready figures from phylogenetic analyses.

Main Methods:

  • EvolView is a web-based application with an intuitive user interface.
  • It supports visualization and customization of phylogenetic trees in various formats.
  • Features include linking external datasets, project organization, and data management.
  • Users can save data and manipulations on the EvolView server with a free account.

Main Results:

  • EvolView enables users to visualize and customize phylogenetic trees effectively.
  • The application allows seamless integration of external datasets with tree data.
  • Users can organize trees and datasets into projects for efficient management.
  • Publication-ready figures can be exported directly from the application.

Conclusions:

  • EvolView offers a comprehensive solution for phylogenetic tree visualization and management.
  • Its user-friendly interface and integrated features enhance research workflows in evolutionary biology.
  • The tool supports data organization and the generation of high-quality figures for publications.