Overexpression of ribosome binding protein 1 (RRBP1) in breast cancer
Deepthi Telikicherla1, Arivusudar Marimuthu, Manoj Kumar Kashyap
1Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India. jagadeesha@ibioinformatics.org.
Abstract:
The molecular events that lead to malignant transformation and subsequent metastasis of breast carcinoma include alterations in the cells at genome, transcriptome and proteome levels. In this study, we used publicly available gene expression databases to identify those candidate genes which are upregulated at the mRNA level in breast cancers but have not been systematically validated at the protein level. Based on an extensive literature search, we identified ribosome binding protein 1 (RRBP1) as a candidate that is upregulated at the mRNA level in five different studies but its protein expression had not been investigated. Immunohistochemical labeling of breast cancer tissue microarrays was carried out to determine the expression of RRBP1 in a large panel of breast cancers. We found that RRBP1 was overexpressed in 84% (177/219) of breast carcinoma cases tested. The subcellular localization of RRBP1 was mainly observed to be in the cytoplasm with intense staining in the perinuclear region. Our findings suggest that RRBP1 is an interesting molecule that can be further studied for its potential to serve as a breast cancer biomarker. This study also demonstrates how the integration of biological data from available resources in conjunction with systematic evaluation approaches can be successfully applied to clinical proteomics.
Insights
Ribosome binding protein 1 (RRBP1) is upregulated in breast cancer at the mRNA level. This study found RRBP1 protein overexpression in 84% of breast carcinomas, suggesting its potential as a breast cancer biomarker.
Area of Science:
- Molecular biology
- Cancer research
- Proteomics
Background:
- Breast carcinoma involves molecular alterations at genomic, transcriptomic, and proteomic levels.
- Identifying genes upregulated at mRNA level requires protein-level validation for biomarker potential.
Purpose of the Study:
- To identify and validate candidate genes upregulated at the mRNA level in breast cancer.
- To investigate the protein expression of ribosome binding protein 1 (RRBP1) in breast carcinoma.
Main Methods:
- Utilized public gene expression databases to identify candidate genes.
- Conducted literature search to pinpoint RRBP1 for further investigation.
- Performed immunohistochemical labeling on breast cancer tissue microarrays to assess RRBP1 protein expression.
Main Results:
- Ribosome binding protein 1 (RRBP1) mRNA is upregulated in breast cancer across multiple studies.
- RRBP1 protein was found to be overexpressed in 84% of the tested breast carcinoma cases.
- Subcellular localization of RRBP1 was predominantly cytoplasmic, with strong perinuclear staining.
Conclusions:
- RRBP1 is significantly overexpressed in breast carcinoma at the protein level.
- RRBP1 warrants further investigation as a potential diagnostic biomarker for breast cancer.
- This study highlights the utility of integrating public data with experimental validation in clinical proteomics.
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