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Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
2-Amino-N'-phenyl-benzohydrazide.
This study details the molecular structure and crystal packing of a novel organic compound. Analysis reveals specific dihedral angles, intramolecular hydrogen bonding, and a 2D network formed by intermolecular interactions including pi-pi stacking.
Area of Science:
- Organic Chemistry
- Crystallography
- Supramolecular Chemistry
Background:
- Understanding the three-dimensional structure of organic molecules is crucial for predicting their properties and reactivity.
- Intermolecular forces, such as hydrogen bonding and pi-pi stacking, dictate crystal packing and influence bulk material characteristics.
Purpose of the Study:
- To elucidate the crystal structure of the title compound, C(13)H(13)N(3)O.
- To analyze the molecular conformation, including dihedral angles between aromatic rings and the NNCO unit.
- To investigate the intermolecular interactions and network formation within the crystal lattice.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the molecular and crystal structure.
- Analysis of bond lengths, bond angles, and dihedral angles provided insights into molecular geometry.
- Identification and characterization of hydrogen bonds and other non-covalent interactions were performed.
Main Results:
- The NNCO unit exhibits dihedral angles of 35.8° and 84.0° with the benzene and phenyl rings, respectively.
- A significant dihedral angle of 61.2° was observed between the two aromatic rings.
- An intramolecular N-H⋯O hydrogen bond was identified, along with intermolecular N-H⋯O and N-H⋯N hydrogen bonds forming a 2D network.
- Pi-pi stacking interactions between phenyl rings with a centroid-centroid distance of 3.803 Å were observed.
Conclusions:
- The crystal structure of C(13)H(13)N(3)O is characterized by specific conformational preferences and extensive intermolecular interactions.
- The formation of a 2D network through hydrogen bonding and pi-pi stacking highlights the importance of supramolecular assembly in the solid state.
- These findings provide a foundation for understanding the structure-property relationships of this class of organic compounds.
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