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Updated: May 21, 2026

In Vitro Differentiation of Human CD4+FOXP3+ Induced Regulatory T Cells (iTregs) from Naïve CD4+ T Cells Using a TGF-β-containing Protocol
Published on: December 30, 2016
Paradoxically increased FOXP3+ T cells in IBD do not preferentially express the isoform of FOXP3 lacking exon 2
James D Lord1, Karine Valliant-Saunders, Hejin Hahn
1Translational Research Program, Benaroya Research Institute, Mailstop IN-RC, 1201 Ninth Ave, Seattle, WA 98101-2795, USA. james.lord@vmmc.org
The Δexon2 variant of FOXP3 does not explain increased regulatory T cells in inflammatory bowel disease (IBD). Researchers found no difference in FOXP3 isoform expression in IBD patients, refuting the hypothesis.
Area of Science:
- Immunology
- Gastroenterology
Background:
- Forkhead box P3 (FOXP3)+ regulatory T cells (Tregs) are crucial for gut inflammation control.
- Inflammatory bowel disease (IBD) shows a paradoxical increase in mucosal FOXP3+ T cells, some producing IL-17A.
- A FOXP3 splice variant (Δexon2) lacks inhibitory function, unlike full-length FOXP3.
Purpose of the Study:
- To test if IBD patients preferentially express the Δexon2 FOXP3 variant.
- To determine if increased mucosal Tregs in IBD are due to exclusive Δexon2 expression.
Main Methods:
- Used specific antibodies and primers to differentiate FOXP3 isoforms (full-length vs. Δexon2).
- Evaluated isoform expression in human intestinal tissue via immunohistochemistry and quantitative PCR.
- Analyzed cells using immunofluorescence microscopy and flow cytometry.
Main Results:
- No significant difference in Δexon2 relative to full-length FOXP3 expression was observed between IBD and control groups.
- Individual cells did not exclusively express the Δexon2 FOXP3 isoform in IBD or control tissues.
- FOXP3+ T cells from both IBD and control specimens could produce IL-17A in vitro but did not preferentially express Δexon2.
Conclusions:
- The study does not support the hypothesis that selective Δexon2 FOXP3 isoform expression explains Treg dysfunction in IBD.
- The findings suggest other mechanisms underlie the inability of FOXP3+ T cells to control inflammation and IL-17 production in IBD.
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