Related Experiment Video
Updated: May 20, 2026

Study of Protein Dynamics via Neutron Spin Echo Spectroscopy
Published on: April 13, 2022
Sensitivity of 2H NMR spectroscopy to motional models: proteins and highly viscous liquids as examples
D Kruk1, A Mielczarek, A Korpala
1University of Warmia and Mazury Olsztyn, Faculty of Mathematics and Computer Science, Sloneczna 54, PL-10710 Olsztyn, Poland. danuta.kruk@matman.uw.edu.pl
Abstract:
In order to study to what extent mechanisms of molecular motion can be unambiguously revealed by (2)H NMR spectroscopy, (2)H spectra for proteins (chicken villin protein headpiece HP36, selectively methyl-deuterated at leucine-69, C(δ) D(3)) and binary systems of high viscosity (benzene-d(6) in tricresyl phosphate) have been carefully analyzed as illustrative examples (the spectra are taken from the literature). In the first case, a model of restricted diffusion mediated by jumps between rotameric orientations has been tested against jump- and free diffusion models which describe rotational motion combined with jump dynamics. It has been found that the set of (2)H spectra of methyl-deuterated at leucine-69 chicken villin protein headpiece HP36 can be consistently explained by different motional models as well as by a gaussian distribution of correlation times assuming isotropic rotation (simple brownian diffusion model). The last finding shows that when the possible distribution of correlation times is not very broad one might not be able to distinguish between heterogeneous and homogenous (but more complex) dynamics by analyzing (2)H lineshapes. For benzene-d(6) in tricresyl phosphate, the dynamics is heterogeneous and it has been demonstrated that a gaussian distribution of correlation times reproduces well the experimental lineshapes, while for a Cole-Davidson distribution the agreement is somewhat worse. For inquires into the sensitivity of quadrupolar NMR spectral analysis (by "quadrupolar NMR spectroscopy we understand NMR spectroscopy of nuclei possessing quadrupole moment), the recently presented theoretical approach [Kruk et al., J. Chem. Phys. 135, 224511 (2011)] has been used as it allows simulating quadrupolar spectra for arbitrary motional conditions by employing the stochastic Liouville equation.
Related Concept Videos
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
¹H NMR: Interpreting Distorted and Overlapping Signals
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
¹H NMR of Labile Protons: Temporal Resolution
The –OH proton in alcohols typically appears in the range of δ 2 to 5 ppm but can vary depending on the specific...
2D NMR: Overview of Homonuclear Correlation Techniques
COSY90 is the standard two-dimensional (2D) COSY experiment that...
Two-Dimensional (2D) NMR: Overview
The first step is the preparation period, during which nucleus A is excited with a radiofrequency pulse.
