Discovery and optimization of potent and selective imidazopyridine and imidazopyridazine mTOR inhibitors

Emily A Peterson1, Alessandro A Boezio, Paul S Andrews

  • 1Medicinal Chemistry, Amgen Inc., 360 Binney St., Cambridge, MA 02142, USA. epeterso@amgen.com

Insights

Researchers developed novel ATP-competitive mTOR inhibitors for cancer therapy. These new compounds show enhanced selectivity and improved drug properties compared to earlier versions.

Area of Science:

  • Biochemistry
  • Oncology
  • Medicinal Chemistry

Background:

  • The mechanistic target of rapamycin (mTOR) pathway is crucial for cell signaling and frequently altered in cancers.
  • The PI3K/AKT/mTOR pathway is a significant target in oncology drug discovery.
  • Previous research identified benzimidazole scaffolds as mTOR inhibitors but with limitations.

Purpose of the Study:

  • To discover novel ATP-competitive mTOR inhibitors with improved pharmacokinetic properties and selectivity.
  • To overcome limitations of previous mTOR inhibitor lead compounds.
  • To identify new chemical scaffolds for targeting the mTOR pathway in cancer.

Main Methods:

  • Structure-guided drug design and targeted structure-activity relationship (SAR) studies.
  • Synthesis and evaluation of novel imidazopyridine and imidazopyridazine scaffolds.
  • In vitro cellular assays for mTOR inhibition and selectivity profiling against PIKK family members.
  • In vivo pharmacokinetic studies assessing clearance.

Main Results:

  • Identified novel imidazopyridine and imidazopyridazine scaffolds with potent mTOR inhibition.
  • Achieved superior selectivity over closely related phosphoinositide 3-kinase-related kinases (PIKKs).
  • Demonstrated improved in vivo pharmacokinetic profiles, specifically reduced clearance, compared to benzimidazole series.

Conclusions:

  • New imidazopyridine and imidazopyridazine scaffolds represent promising candidates for developing next-generation mTOR inhibitors.
  • These compounds offer enhanced selectivity and pharmacokinetic properties, crucial for effective oncology therapeutics.
  • The findings advance the development of targeted therapies for cancers driven by the mTOR pathway.

Related Concept Videos

mTOR Signaling and Cancer Progression03:03

mTOR Signaling and Cancer Progression

The mammalian target of rapamycin or mTOR protein was discovered in 1994 due to its direct interaction with rapamycin. The protein gets its name from a yeast homolog called TOR. The mTOR protein complex in mammalian cells plays a major role in balancing anabolic processes such as the synthesis of proteins, lipids, and nucleotides and catabolic processes, such as autophagy in response to environmental cues, such as availability of nutrients and growth factors.
The mTOR pathway or the...
mTOR Signaling and Cancer Progression03:03

mTOR Signaling and Cancer Progression

The mammalian target of rapamycin or mTOR protein was discovered in 1994 due to its direct interaction with rapamycin. The protein gets its name from a yeast homolog called TOR. The mTOR protein complex in mammalian cells plays a major role in balancing anabolic processes such as the synthesis of proteins, lipids, and nucleotides and catabolic processes, such as autophagy in response to environmental cues, such as availability of nutrients and growth factors.
The mTOR pathway or the...
PI3K/mTOR/AKT Signaling Pathway01:22

PI3K/mTOR/AKT Signaling Pathway

The mammalian target of rapamycin  (mTOR) is a serine/threonine kinase that regulates growth, proliferation, and cell survival in response to hormones, growth factors, or nutrient availability. This kinase exists in two structurally and functionally distinct forms: mTOR complex 1  (mTORC1) and mTOR complex 2  (mTORC2). The first form (mTORC1) is composed of a rapamycin-sensitive Raptor and proline-rich Akt substrate, PRAS40. In contrast,  mTORC2 consists of a rapamycin-insensitive companion...
Drug Discovery: Overview01:26

Drug Discovery: Overview

Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
Targeted Cancer Therapies02:57

Targeted Cancer Therapies

The targeted cancer therapies, also known as “molecular targeted therapies,” take advantage of the molecular and genetic differences between the cancer cells and the normal cells. It needs a thorough understanding of the cancer cells to develop drugs that can target specific molecular aspects that drive the growth, progression, and spread of cancer cells without affecting the growth and survival of other normal cells in the body.
There are several types of targeted therapies against specific...
Inhibition of Cdk Activity02:34

Inhibition of Cdk Activity

The orderly progression of the cell cycle depends on the activation of Cdk protein by binding to its cyclin partner. However, the cell cycle must be restricted when undergoing abnormal changes. Most cancers correlate to the deregulated cell cycle, and since Cdks are a central component of the cell cycle, Cdk inhibitors are extensively studied to develop anticancer agents. For instance, cyclin D associates with several Cdks, such as Cdk 4/6, to form an active complex. The cyclin D-Cdk4/6 complex...