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A Blood-based Test for the Detection of ROS1 and RET Fusion Transcripts from Circulating Ribonucleic Acid Using Digital Polymerase Chain Reaction
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A novel "reactomics" approach for cancer diagnostics.

Sofiya Kolusheva1, Rami Yossef, Aleksandra Kugel

  • 1Ilse Katz Institute for Nanoscale Science and Technology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel. kolushev@bgu.ac.il

Sensors (Basel, Switzerland)
|July 11, 2012
PubMed
Summary

A new diagnostic method called reactomics uses blood sera reactions with special vesicles to detect cancer. This colorimetric approach accurately distinguishes between cancer patients and healthy individuals, offering a promising tool for disease detection.

Keywords:
bioinformaticsbiomarkercancerdiagnosticspolydiacetyleneserum

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Area of Science:

  • Biomaterials Science
  • Nanotechnology
  • Medical Diagnostics

Background:

  • Non-invasive disease detection, particularly for cancers, is crucial for improving patient treatment outcomes and survival rates.
  • Current diagnostic methods often rely on identifying specific biomarkers, which may not always be available or effective for all diseases.

Purpose of the Study:

  • To introduce and evaluate a novel diagnostic approach, termed "reactomics," for the non-invasive detection and monitoring of diseases.
  • To demonstrate the capability of reactomics to differentiate between healthy individuals and cancer patients, and even between different cancer types.

Main Methods:

  • Developed a diagnostic platform utilizing an array of vesicles composed of lipids and polydiacetylene (PDA), a chromatic polymer.
  • Analyzed chromatic patterns generated from the reaction between blood sera and the lipid/PDA vesicle array using machine-learning algorithms.
  • Conducted size-separation and enzymatic digestion experiments to identify the reacting serum components.

Main Results:

  • The reaction between sera and the vesicle array produced distinct chromatic patterns influenced by serum composition and vesicle lipids.
  • Bioinformatics analysis successfully distinguished between cancer-bearing and healthy patients, as well as between two distinct cancer types.
  • Lipoproteins were identified as the primary serum components responsible for the reaction with the chromatic vesicles.

Conclusions:

  • The colorimetric reactomics concept provides a generic, robust, and label-free method for disease diagnostics.
  • This approach does not require prior knowledge of specific disease markers, making it broadly applicable.
  • Reactomics can serve as a valuable complementary or alternative strategy for disease detection and monitoring.