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Updated: May 20, 2026

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Mutational analysis of PIK3CA, JAK2, BRAF, FOXL2, IDH1, AKT1 and EZH2 oncogenes in sarcomas
Eun M Je1, Chang H An, Nam J Yoo
1Department of Pathology, College of Medicine, The Catholic University of Korea, Seoul, Korea.
Abstract:
Recent studies have revealed several recurrent mutations in oncogenes that could not only be underlying mechanisms of tumorigenesis, but also be potential targets for cancer therapies. Compared to carcinomas, genetic alterations of sarcomas are relatively unknown. To see whether recurrent oncogenes discovered in non-sarcomatous malignancies are present in sarcomas as well, we analyzed oncogenes with known mutations in various types of sarcomas. We performed mutational analysis of recurrent mutation sites of PIK3CA (exons 9 and 20), JAK2 (exon 14), BRAF (exon 15), FOXL2 (exon 1), IDH1 (exon 4), AKT1 (exon 3), and EZH2 (exon 16) genes in 108 sarcomas by single- strand conformation polymorphism and DNA sequencing. The sarcomas consisted of malignant fibrous histiocytomas, rhabdomyosarcomas, osteosarcomas, malignant peripheral nerve sheath tumors, leiomyosarcomas, synovial sarcomas, liposarcomas, angiosarcomas, chondrosarcomas, and Ewing sarcomas. Overall, we detected the two PIK3CA mutations and one JAK2 mutation (total: 3/108: 2.8%). Two rhabdomyosarcomas (16.7%) and one angiosarcoma (16.7%) harbored the mutations, whereas other sarcomas harbored none. The PIK3CA mutations were novel missense mutations that had not been detected in other cancers. The JAK2 mutation was an intron mutation. This study demonstrated that the somatic mutations of PIK3CA and JAK2 occurred in a small fraction of the sarcomas and that these mutations may not play a principal role in the development of sarcomas.
Insights
Recurrent PIK3CA and JAK2 gene mutations were found in a small percentage of sarcomas. These specific oncogene alterations may not be primary drivers in sarcoma development.
Area of Science:
- Oncology
- Cancer Genetics
Background:
- Recurrent oncogene mutations are key in tumorigenesis and cancer therapy targets.
- Genetic landscape of sarcomas remains less understood compared to carcinomas.
Purpose of the Study:
- To investigate the presence of known recurrent oncogene mutations in various sarcoma types.
- To determine if common oncogene alterations found in other cancers are present in sarcomas.
Main Methods:
- Analyzed 108 sarcomas for mutations in PIK3CA, JAK2, BRAF, FOXL2, IDH1, AKT1, and EZH2 genes.
- Utilized single-strand conformation polymorphism and DNA sequencing for mutational analysis.
Main Results:
- Detected three mutations in total: two PIK3CA and one JAK2 mutation (2.8% of cases).
- Mutations were identified in two rhabdomyosarcomas and one angiosarcoma.
- PIK3CA mutations were novel missense types; JAK2 mutation was intronic.
Conclusions:
- Somatic mutations in PIK3CA and JAK2 occur infrequently in sarcomas.
- These specific mutations likely do not play a major role in the pathogenesis of most sarcomas.
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