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Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays
Published on: November 12, 2012
Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups
1Microbiology Services-Colindale, Health Protection Agency, London, United Kingdom. michel.doumith@hpa.org.uk
Journal of Clinical Microbiology
|July 13, 2012
Abstract:
Using data from whole-genome projects, an updated multiplex PCR strategy was developed to assign Escherichia coli isolates rapidly to major phylogenetic groups. This assay accommodates sequence variations detected within target sequences, thereby increasing sensitivity and reliability. It was validated using 185 isolates of known sequence types and showed improved congruence with multilocus sequence typing data.

