Related Experiment Video
Updated: May 20, 2026

10:44
Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
Chemoenzymatic deacylation of ramoplanin
Raffaella Gandolfi1, Flavia Marinelli, Enzio Ragg
1Dipartimento di Scienze Farmaceutiche, Via Venezian 21, 20133 Milano, Italy.
Bioorganic & Medicinal Chemistry Letters
|July 17, 2012
Summary
A novel chemoenzymatic method for ramoplanin A2 deacylation was developed using an Actinoplanes utahensis acylase. This process achieved an 80% yield, outperforming traditional chemical deacylation methods.
Area of Science:
- Biotechnology
- Organic Chemistry
- Enzymology
Background:
- Ramoplanin A2 is a lipoglycopeptide antibiotic with significant therapeutic potential.
- Existing chemical deacylation methods for ramoplanin A2 can be harsh and inefficient.
- Enzymatic approaches offer a milder and potentially more selective alternative for modifying complex molecules.
Purpose of the Study:
- To establish and optimize a chemoenzymatic deacylation process for ramoplanin A2.
- To compare the efficiency and yield of the chemoenzymatic method with existing chemical deacylation techniques.
- To explore the utility of Actinoplanes utahensis NRRL 12052 acylase in modifying complex antibiotic structures.
Main Methods:
- Ramoplanin A2 was protected with a Boc group and hydrogenated to form Boc-protected tetrahydroramoplanin.
- The protected intermediate was then subjected to enzymatic deacylation using an acylase from Actinoplanes utahensis NRRL 12052.
- The overall yield of the chemoenzymatic process was determined and compared to chemical methods.
Main Results:
- The chemoenzymatic deacylation of ramoplanin A2 was successfully achieved for the first time.
- The process yielded Boc-protected tetrahydroramoplanin, demonstrating selective deacylation.
- An overall yield of 80% was obtained, which is favorable compared to previous chemical deacylation results.
Conclusions:
- Chemoenzymatic deacylation using Actinoplanes utahensis acylase provides an efficient and high-yielding route to modified ramoplanin A2 derivatives.
- This enzymatic approach represents a significant advancement over traditional chemical methods for ramoplanin A2 modification.
- The developed method holds promise for the synthesis of novel lipoglycopeptide analogs with potential therapeutic applications.
Related Concept Videos
Alkylation of β-Diester Enolates: Malonic Ester Synthesis
Malonic ester synthesis is a method to obtain α substituted carboxylic acids from ꞵ-diesters such as diethyl malonate and alkyl halides.
Inhibitors of Bacterial Protein Synthesis
Aminoglycosides constitute a highly potent class of bactericidal antibiotics that exert their antimicrobial effects by targeting the bacterial ribosome, specifically disrupting protein synthesis. These polycationic molecules consist of amino-modified sugars linked via glycosidic bonds to an aminocyclitol core such as 2-deoxystreptamine or streptamine. Their strong positive charges facilitate tight binding to the negatively charged phosphate backbone of ribosomal RNA (rRNA), primarily at the 16S...
Amino Acid Catabolism
Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...
Ribozymes
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can be...
Ribozymes can be...
Amides to Carboxylic Acids: Hydrolysis
Amides can undergo either acid-catalyzed hydrolysis or base-promoted hydrolysis through a typical nucleophilic acyl substitution. Each hydrolysis requires severe conditions.
Acid-catalyzed hydrolysis:
Hydrolysis of amides under acidic conditions yields carboxylic acids. Since the reaction occurs slowly, hydrolysis requires the conditions of heat.
The mechanism begins with the protonation of the carbonyl oxygen by the acid catalyst. The protonation makes the amide carbonyl carbon more...
Acid-catalyzed hydrolysis:
Hydrolysis of amides under acidic conditions yields carboxylic acids. Since the reaction occurs slowly, hydrolysis requires the conditions of heat.
The mechanism begins with the protonation of the carbonyl oxygen by the acid catalyst. The protonation makes the amide carbonyl carbon more...

