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Updated: May 20, 2026

Detection of Targetable Alterations in Non-small Cell Lung Cancer using Next-generation Sequencing
Published on: October 10, 2025
Routine EGFR and KRAS Mutation analysis using COLD-PCR in non-small cell lung cancer
A Pennycuick1, T Simpson, D Crawley
1School of Medicine, King's College London, Guy's Hospital, London, UK Guy's and St Thomas' NHS Foundation Trust, London, UK.
Abstract:
Aims: Epidermal growth factor receptor (EGFR) antagonists are particularly active in non-small cell lung cancer (NSCLC) patients with tumours bearing mutations in the EFGR gene. EGFR mutation prevalence is very low in squamous histology. Response rates using these drugs in patients with KRAS mutations are low, so available KRAS mutation information may aid treatment selection in the second-line setting. Since 2009, patients presenting to this hospital with non-squamous histology have been routinely screened for mutations in both the EGFR and KRAS genes, with results used to inform treatment. We present an analysis of 215 consecutive patients for whom EGFR mutation analysis was informative. Methodology: EGFR and KRAS mutations were identified using a COLD-PCR technique confirmed with sequencing, which makes no prior assumption about location of specific mutations. Results were correlated with clinical and demographic data from hospital records, where available. Results: The prevalence of patients with EGFR mutations was 14% and for KRAS mutations it was 27%. Despite the conventional understanding that EGFR and KRAS mutations are mutually exclusive, we identified two dual mutations. Of 29 patients identified with mutated EGFR, there were 3/8/8/10 mutations in exons 18/19/20/21 respectively. Exon 20 mutations were identified in a proportion exceeding many other series because of the unbiased mutation analysis used, and clinical benefit was seen in some of these. Of 23 different EGFR mutations identified, 11 have not previously been described in the literature. Conclusions: The high prevalence of EGFR, KRAS or both mutations (40%) in this non-squamous population tested in clinical practice supports a policy of routine screening for these mutations in NSCLC.
Insights
Routine screening for EGFR and KRAS mutations in non-small cell lung cancer (NSCLC) patients reveals a high prevalence (40%) of actionable mutations, supporting its clinical utility.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epidermal growth factor receptor (EGFR) antagonists are effective in non-small cell lung cancer (NSCLC) with EGFR mutations.
- EGFR mutation prevalence is low in squamous histology, and KRAS mutations are associated with poor response to these therapies.
- Routine screening for EGFR and KRAS mutations in non-squamous NSCLC guides second-line treatment selection.
Purpose of the Study:
- To analyze the prevalence of EGFR and KRAS mutations in a consecutive cohort of 215 non-squamous NSCLC patients.
- To evaluate the clinical utility of routine mutation screening in informing treatment decisions.
- To investigate the occurrence of dual EGFR and KRAS mutations.
Main Methods:
- EGFR and KRAS mutations were identified using COLD-PCR and confirmed with sequencing.
- Unbiased mutation analysis was employed, without prior assumptions on mutation location.
- Clinical and demographic data were correlated with mutation status.
Main Results:
- EGFR mutations were found in 14% of patients, and KRAS mutations in 27%.
- Two cases of dual EGFR and KRAS mutations were identified, challenging conventional understanding.
- Exon 20 EGFR mutations were identified at a higher proportion due to the unbiased analysis, with observed clinical benefit.
Conclusions:
- A combined prevalence of 40% for EGFR, KRAS, or dual mutations in non-squamous NSCLC supports routine screening.
- Routine mutation screening is valuable for guiding treatment selection in NSCLC.
- The study identified novel EGFR mutations, expanding the landscape of known genetic alterations.
