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Updated: May 20, 2026

09:45
Modification and Functionalization of the Guanidine Group by Tailor-made Precursors
Published on: April 27, 2017
2-(2,4-Difluoro-phen-yl)-5-nitro-pyridine.
Summary
This study details the crystal structure of a fluorinated nitro-pyridine molecule. It reveals specific molecular orientations and intermolecular interactions like pi-pi stacking and hydrogen bonds, influencing crystal packing.
Area of Science:
- Crystallography
- Organic Chemistry
- Materials Science
Background:
- Understanding molecular interactions is crucial for designing novel materials.
- Crystal structure analysis provides insights into intermolecular forces and packing arrangements.
- Fluorinated organic compounds exhibit unique electronic and physical properties.
Purpose of the Study:
- To elucidate the crystal structure and intermolecular interactions of C(11)H(6)F(2)N(2)O(2).
- To investigate the influence of functional groups (nitro, fluorine) on molecular conformation and crystal packing.
- To characterize the hydrogen bonding and pi-pi stacking interactions within the crystal lattice.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the molecular and crystal structure.
- Analysis of bond lengths, bond angles, and dihedral angles provided conformational details.
- Intermolecular interactions, including hydrogen bonds and pi-pi stacking, were identified and quantified.
Main Results:
- The title molecule, C(11)H(6)F(2)N(2)O(2), exhibits a dihedral angle of 32.57° between its benzene and pyridine rings.
- The nitro group is tilted by 12.26° relative to the pyridine ring.
- An intramolecular C-H⋯F hydrogen bond was observed, alongside intermolecular C-H⋯O and C-H⋯N hydrogen bonds.
- Molecules form columnar arrangements along the b axis due to pi-pi stacking interactions with centroid-centroid distances of 3.7457 Å.
Conclusions:
- The crystal structure is stabilized by a combination of intramolecular and intermolecular hydrogen bonds, as well as pi-pi stacking.
- The observed molecular conformation and packing arrangement are influenced by the presence of fluorine and nitro substituents.
- These findings contribute to the understanding of structure-property relationships in fluorinated heterocyclic compounds.
Related Concept Videos
Five-Membered Heterocyclic Aromatic Compounds: Overview
Heterocyclic aromatic compounds are cyclic compounds that are aromatic and have one or more heteroatoms—atoms other than carbon, in the ring. Depending upon the number of atoms present in the ring, they can be either five or six-membered. Examples of five-membered heterocyclic aromatic compounds include pyrrole, furan, thiophene, and imidazole. Pyrrole consists of one nitrogen atom having one lone pair of electrons. Furan and thiophene have one oxygen and one sulfur heteroatom, respectively.
Basicity of Heterocyclic Aromatic Amines
Heterocyclic amines, where the N atom is a part of an alicyclic system, are similar in basicity to alkylamines. Interestingly, the heterocyclic amine having a nitrogen atom as part of an aromatic ring has much less basicity than its corresponding alicyclic counterpart. For this reason, as presented in Figure 1, piperidine (pKb = 2.8) is significantly more basic than pyridine (pKb = 8.8).

