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Updated: May 20, 2026

A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
Mutation analysis of NF-κB signal pathway-related genes in ocular MALT lymphoma
Fang Liu1, Kennosuke Karube, Harumi Kato
1Division of Molecular Medicine, Aichi Cancer Center Research Institute, Nagoya, Japan.
Abstract:
Constitutive nuclear factor-kappa B (NF-κB) activation has been reported in ocular adnexal lymphoma (OAL). TNFAIP3/A20 is a "global" inhibitor of NF-κB pathway. We have shown that OAL has preferential loss of the 6q23.3 region where TNFAIP3/A20 exist, which is suggested to involve in lymphomagenesis of OAL. The mechanisms causing NF-κB activity in OAL remain elusive. Recently, NF-κB canonical pathway genes including CARD11, CD79B and MYD88 were shown to be frequently mutated in diffuse large B-cell lymphomas. In this study, we analyzed the mutation status of these genes by direct sequencing in 24 OAL cases including 9 cases with loss of 6q23.3 previously identified by array comparative genomic hybridization. We showed that genetic alterations of these genes were not found in OAL, a finding differing from that of most B-cell lymphomas. Genetic or epigenetic alterations in other genes are likely to be relevant in pathogenesis of OAL case without A20 loss.
Insights
Ocular adnexal lymphoma (OAL) shows constitutive nuclear factor-kappa B (NF-κB) activation. Genetic alterations in key NF-κB pathway genes were not found in OAL, suggesting other mechanisms are involved.
Area of Science:
- Oncology
- Genetics
- Immunology
Background:
- Constitutive nuclear factor-kappa B (NF-κB) activation is observed in ocular adnexal lymphoma (OAL).
- TNFAIP3/A20, a NF-κB inhibitor, is frequently lost in OAL, implicating it in lymphomagenesis.
- Mechanisms driving NF-κB activity in OAL are not fully understood.
Purpose of the Study:
- To investigate the mutation status of NF-κB canonical pathway genes (CARD11, CD79B, MYD88) in OAL.
- To determine if these mutations contribute to NF-κB activation in OAL, particularly in cases with 6q23.3 loss.
Main Methods:
- Direct sequencing was used to analyze the mutation status of CARD11, CD79B, and MYD88 genes.
- The study included 24 OAL cases, with 9 previously identified as having 6q23.3 loss via array comparative genomic hybridization.
Main Results:
- No genetic alterations were found in the analyzed NF-κB canonical pathway genes (CARD11, CD79B, MYD88) in OAL cases.
- This finding contrasts with observations in other B-cell lymphomas where these genes are frequently mutated.
Conclusions:
- The pathogenesis of OAL does not appear to involve mutations in CARD11, CD79B, or MYD88.
- Alternative genetic or epigenetic alterations in other genes are likely responsible for NF-κB activation in OAL, especially in cases without TNFAIP3/A20 loss.
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