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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
The PP2A-Aβ gene is regulated by multiple transcriptional factors including Ets-1, SP1/SP3, and RXRα/β
1Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE 68198-5870, USA.
Abstract:
Protein phosphatase-2A (PP-2A) is a major serine/threonine phosphatase abundantly expressed in eukaryotes. PP-2A is a heterotrimer that contains a 65 kD scaffold A subunit, a 36 kD catalytic C subunit, and a regulatory B subunit of variable isoforms ranging from 54-130 kDs. The scaffold subunits, PP2A-Aα/β, act as platforms for both the C and B subunits to bind, and thus are key structural components for PP-2A activity. Mutations in both genes encoding PP2A-Aα and PP2A-Aβ lead to carcinogenesis and likely other human diseases. Our previous work showed that the gene coding for PP2A-Aα is positively regulated by multiple transcription factors including Ets-1, CREB, and AP-2α but negatively regulated by SP-1/SP-3. In the present study, we have functionally dissected the promoter of the mouse PP2A-Aβ gene. Our results demonstrate that three major cis-elements, including the binding sites for Ets-1, SP1/SP3, and RXRα/β, are present in the proximal promoter of the mouse PP2A-Aβ gene. Gel mobility shifting assays reveal that Ets-1, SP1/SP3, and RXRα/β all bind to PP2A-Aβ gene promoter. In vitro mutagenesis and reporter gene activity assays demonstrate that while Ets-1 displays negative regulation, SP1/SP3 and RXRα/β positively regulate the promoter of the PP2A-Aβ gene. Co-expression of the cDNAs encoding Ets-1, SP1/SP3, or RXRα/β and the luciferase reporter gene driven by PP2A-Aβ promoter further confirm their control over the PP2A-Aβ promoter. Finally, ChIP assays demonstrate that Ets-1, SP1/SP3, and RXRα/β can all bind to the PP2A-Aβ gene promoter. Together, our results reveal that multiple transcription factors regulate the PP2A-Aβ gene. Moreover, our results provide important information explaining why PP2A-Aα and PP2A-Aβ display distinct expression levels.
Insights
Transcription factors Ets-1, SP1/SP3, and RXRα/β regulate the mouse PP2A-Aβ gene promoter. Ets-1 negatively controls expression, while SP1/SP3 and RXRα/β positively regulate it, explaining distinct PP2A-Aα and PP2A-Aβ expression levels.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Protein phosphatase-2A (PP-2A) is a crucial eukaryotic enzyme involved in various cellular processes.
- PP-2A's scaffold subunits (PP2A-Aα/β) are essential for its activity and mutations are linked to carcinogenesis.
- Distinct expression patterns of PP2A-Aα and PP2A-Aβ suggest differential gene regulation.
Purpose of the Study:
- To functionally dissect the promoter of the mouse PP2A-Aβ gene.
- To identify and characterize the transcription factors regulating PP2A-Aβ gene expression.
- To elucidate the mechanisms underlying differential expression of PP2A-Aα and PP2A-Aβ.
Main Methods:
- Promoter analysis using in vitro mutagenesis and reporter gene assays.
- Gel mobility shifting assays to detect transcription factor binding.
- Chromatin immunoprecipitation (ChIP) assays to confirm in vivo binding.
Main Results:
- Identified Ets-1, SP1/SP3, and RXRα/β binding sites in the proximal PP2A-Aβ promoter.
- Ets-1 negatively regulates PP2A-Aβ promoter activity, while SP1/SP3 and RXRα/β positively regulate it.
- Confirmed binding of Ets-1, SP1/SP3, and RXRα/β to the PP2A-Aβ gene promoter in vivo via ChIP assays.
Conclusions:
- Multiple transcription factors, including Ets-1, SP1/SP3, and RXRα/β, orchestrate the regulation of the PP2A-Aβ gene.
- These regulatory mechanisms contribute to the distinct expression levels observed between PP2A-Aα and PP2A-Aβ.
- Provides insights into the molecular basis of PP2A subunit gene regulation and potential links to human diseases.
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