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Updated: May 19, 2026

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Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens
Published on: March 8, 2018
Developing integrated workflows for the digitisation of herbarium specimens using a modular and scalable approach
Elspeth Haston1, Robert Cubey, Martin Pullan
1Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, EH3 5LR, UK.
Zookeys
|August 4, 2012
Summary
Royal Botanic Garden Edinburgh developed an integrated digitisation workflow for herbarium specimens. This modular system streamlines specimen, data, and image processing for efficient collection management.
Area of Science:
- Botany
- Digital Curation
- Information Science
Background:
- Digitisation programs often face inconsistent funding and diverse operational approaches.
- Existing methods lack integration, leading to inefficiencies in managing herbarium specimens.
- The Royal Botanic Garden Edinburgh (RBGE) sought a unified digitisation strategy.
Purpose of the Study:
- To develop a modular and scalable integrated workflow for digitising herbarium specimens at RBGE.
- To create a standardized process applicable to all digitisation projects.
- To enhance efficiency and consistency in herbarium collection management.
Main Methods:
- Implementation of a three-element integrated workflow: specimen, data, and image.
- Linking specimen workflow to curatorial processes, including conservation considerations.
- Developing distinct data workflows for label, curatorial, and supplementary data.
- Utilizing custom software for rapid curatorial data capture and optical character recognition (OCR) for label and supplementary data.
- Incorporating automated systems for efficient image processing.
Main Results:
- The integrated workflow provides a modular and scalable solution for digitisation.
- Custom software and OCR significantly improve data capture efficiency.
- Automated systems address the challenges of processing large image datasets.
- The workflow integrates curatorial processes and conservation aspects.
Conclusions:
- An integrated, modular, and scalable digitisation workflow is essential for efficient herbarium specimen management.
- Combining custom software, OCR, and automation enhances data and image processing.
- The developed workflow supports better prioritisation, selection, and preparation of specimens.

